guix_mirror_bot pushed a commit to branch master
in repository guix.
commit f53a46f660361318d79f4d4f82de0745a045367e
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Fri Feb 20 14:05:58 2026 +0100
gnu: Add r-giottoutils.
* gnu/packages/bioinformatics.scm (r-giottoutils): New variable.
Change-Id: Ia7acb1fc364f7076cf73f08d9335cd05a23b5f43
---
gnu/packages/bioinformatics.scm | 48 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f7b7ecd31a..daef48c930 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19372,6 +19372,54 @@ convenience functions for loading specific
technologies are found in the base
Giotto package.")
(license license:expat))))
+(define-public r-giottoutils
+ (let ((commit "1ce82e5303b002540b41b6bf90ff543c26f41b31")
+ (revision "1"))
+ (package
+ (name "r-giottoutils")
+ (version (git-version "0.2.5" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/drieslab/GiottoUtils";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "04wm0ym07gz5zi639nm175vv7xsg0rja9vdb03jv969zbwcrd8mv"))))
+ (properties `((upstream-name . "GiottoUtils")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'find-python
+ (lambda _
+ (setenv "RETICULATE_PYTHON" (which "python3")))))))
+ (propagated-inputs (list r-biocparallel
+ r-checkmate
+ r-data-table
+ r-dplyr
+ r-future
+ r-gtools
+ r-jsonlite
+ r-lifecycle
+ r-magrittr
+ r-matrix
+ r-progressr
+ r-r-utils
+ r-rcolorbrewer
+ r-remotes
+ r-reticulate
+ python-scipy))
+ (inputs (list python-wrapper))
+ (native-inputs (list r-knitr r-testthat))
+ (home-page "https://github.com/drieslab/GiottoUtils";)
+ (synopsis "Giotto suite utilities")
+ (description "This package provides utility functions and imports for
+Giotto Suite.")
+ (license license:expat))))
+
(define-public r-giotto
(let ((commit "3e6671a2512484a7b90b421b7e697d1abc2ec760")
(revision "1"))
