guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 07eae7c91518ab5aeb086c502e9371ae4b8cadfe
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Fri Feb 20 14:04:50 2026 +0100
gnu: Add r-giottoclass.
* gnu/packages/bioinformatics.scm (r-giottoclass): New variable.
Change-Id: Icf95b3fd1f6dd4f14a13bc71d52a6febf6713b3e
---
gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 92f3b49714..f7b7ecd31a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19331,6 +19331,47 @@ analysing cytometry data in R.")
controls for use in @code{CytoExploreR}.")
(license license:gpl2))))
+(define-public r-giottoclass
+ (let ((commit "15627a29bcdaf7e484546363b185a2ccee6470a5")
+ (revision "1"))
+ (package
+ (name "r-giottoclass")
+ (version (git-version "0.4.10" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/drieslab/GiottoClass";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "15kaf1wli8sc8d9k9l4bkl4z68yrva1zi9w5yqgbbw1n44khn8yx"))))
+ (properties `((upstream-name . "GiottoClass")))
+ (build-system r-build-system)
+ ;; Tests require r-giottodata, which requires r-giottoclass.
+ (arguments (list #:tests? #false))
+ (propagated-inputs (list r-checkmate
+ r-data-table
+ r-dbscan
+ r-deldir
+ r-giottoutils
+ r-igraph
+ r-matrix
+ r-matrixstats
+ r-reticulate
+ r-terra))
+ (native-inputs (list r-knitr r-testthat))
+ (home-page "https://github.com/drieslab/GiottoClass";)
+ (synopsis "Giotto suite object definitions and framework")
+ (description
+ "This package provides definitions for the Giotto object and its
+subobjects. Functionalities relating to data ingestion, basic object
+creation, data access within the Giotto object, and generics defined for the
+Giotto classes are all found here. Applications of this framework and
+convenience functions for loading specific technologies are found in the base
+Giotto package.")
+ (license license:expat))))
+
(define-public r-giotto
(let ((commit "3e6671a2512484a7b90b421b7e697d1abc2ec760")
(revision "1"))
