Re: [HCP-Users] How to do network analysis from resting-state fMRI data?

[Glasser, Matthew]

You might try making sure you have the latest version of the GIFTI matlab toolbox (http://www.artefact.tk/software/matlab/gifti/) and of Connectome Workbench. Peace, Matt. From: 木村一皓 <ikko1001...@gmail.com> Date: Friday, October 17, 2014 at 12:52 AM To: Matt Glasser <glass...@wusm.wustl.edu> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] How to do network analysis from resting-state fMRI data? Dear Matt,  Thanks for your answer, and sorry for my slow reply. Following your advise, I typed as follows in matlab (If I've done the wrong thing, please correct me);   [cii]=ciftiopen('path_to_next/netmats/HCP500_Parcellation_Timeseries_Netmats/netmats/3T_Q1-Q6related468_MSMsulc_d300_ts2_netmat1/100307.pconn.nii','path_to_next/workbench/bin_rh_linux64/wb_command'); then came following error Unable to load library icui18n "Cannot load library icui18n: (icui18n: cannot open shared object file: No such file or directory)" Elapsed time is 0.333772 seconds. Error using struct Too many input arguments. Error in gifti>giftistruct (line 93) s = struct(... Error in gifti (line 71)                 this = read_gifti_file_standalone(varargin{1},giftistruct); Error in ciftiopen (line 16) cifti = gifti([tmpname '.gii']); Do you  have any idea what's going on and what should I do? Best, Ikko 2014-10-14 2:11 GMT+09:00 Glasser, Matthew <glass...@wusm.wustl.edu>: See the e-mail I forwarded to the list entitled: [HCP-Users] FW: Converting/analysing preprocessed rfMRI grayordinates for reading in .pconn.nii files into matlab. Peace, Matt. From: 木村一皓 <ikko1001...@gmail.com> Date: Monday, October 13, 2014 at 2:11 AM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] How to do network analysis from resting-state fMRI data? Dear all,  I'm now trying to do some analysis from resting-state fMRI of HCP data.  I recently realized that HCP has released the data of  matrices (netmats), and thought this would help, which leads to folloiwing questions.  My questions are: 1. First of  all, can I do network analysis from netmats? 2. If so, I would like to get Connectivity Matrices readable in matlab. Can I do this from ".pconnn.niii"? If I can, what should I do? 3. I first thought that I'd like to get CM with nodes of AAL, and DPARSF would help in this case, which I found was wrong from recent post. Then what software would be recommended to  do this? Best, Ikko _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users