Re: [HCP-Users] Fwd: Regarding: fsl version 5.0.6

Glasser, Matthew Mon, 20 Apr 2015 14:25:39 -0700

You’ll want to use Connectome Workbench to view CIFTI results:

http://www.humanconnectome.org/software/connectome-workbench.html

Peace,

Matt.

From: Dr Sampada Sinha <[email protected]>
Date: Monday, April 20, 2015 at 4:21 PM
Cc: "[email protected]" <[email protected]>
Subject: Re: [HCP-Users] Fwd: Regarding: fsl version 5.0.6

Dear HCP experts,

I was able to run the the TaskfMRIAnalysisBatch (Gambling task) script against data that was processed using the PreFS,FS,PostFS, and GenericfMRI batch scripts (ran both the volumeprocessingbatch and surfaceprocessingbatch scripts). The error I was getting earlier while running taskanalysis script was at level2 script which was because I had to manually create a separate directory named tfMRI_GAMBLING with level2.fsf file copied into it.

The TaskfMRIAnalysisBatch.sh script ran and it got completed without error but when I am trying to open the cope file and the ztstat files using fsl its not opening and it comes up with a blank page instead. fsl info and fslstats says the following error:

Last login: Mon Apr 20 15:15:34 on ttys000

D20141616:~ scan$ fslstats /Volumes/HCP_Data/taskfMRI_Gambling/LS2001/MNINonLinear/Results/tfMRI_GAMBLING/tfMRI_GAMBLING_hp200_s2_level2.feat/GrayordinatesStats/cope1.feat/zstat1.dtseries.nii -R

** ERROR: nifti_convert_nhdr2nim: bad datatype

** ERROR (nifti_image_read): cannot create nifti image from header '/Volumes/HCP_Data/taskfMRI_Gambling/LS2001/MNINonLinear/Results/tfMRI_GAMBLING/tfMRI_GAMBLING_hp200_s2_level2.feat/GrayordinatesStats/cope1.feat/zstat1.dtseries.nii'

** ERROR: nifti_image_open(/Volumes/HCP_Data/taskfMRI_Gambling/LS2001/MNINonLinear/Results/tfMRI_GAMBLING/tfMRI_GAMBLING_hp200_s2_level2.feat/GrayordinatesStats/cope1.feat/zstat1.dtseries): bad header info

ERROR: failed to open file /Volumes/HCP_Data/taskfMRI_Gambling/LS2001/MNINonLinear/Results/tfMRI_GAMBLING/tfMRI_GAMBLING_hp200_s2_level2.feat/GrayordinatesStats/cope1.feat/zstat1.dtseries

Image Exception : #22 :: ERROR: Could not open image /Volumes/HCP_Data/taskfMRI_Gambling/LS2001/MNINonLinear/Results/tfMRI_GAMBLING/tfMRI_GAMBLING_hp200_s2_level2.feat/GrayordinatesStats/cope1.feat/zstat1.dtseries

D20141616:~ scan$ fslinfo /Volumes/HCP_Data/taskfMRI_Gambling/LS2001/MNINonLinear/Results/tfMRI_GAMBLING/tfMRI_GAMBLING_hp200_s2_level2.feat/GrayordinatesStats/cope1.feat/zstat1.dtseries.nii

** ERROR: nifti_convert_nhdr2nim: bad datatype

ERROR: failed to open file /Volumes/HCP_Data/taskfMRI_Gambling/LS2001/MNINonLinear/Results/tfMRI_GAMBLING/tfMRI_GAMBLING_hp200_s2_level2.feat/GrayordinatesStats/cope1.feat/zstat1.dtseries

ERROR: Could not open file

Will you please let me know where am I going wrong?

Thanks and regards,

Sampada

Sampada Sinha

Post-Doctoral Associate

University of Minnesota (East Bank)

Molecular and neuroimaging laboratory

Department of Psychiatry

Minneapolis-55415

_______________________________________________
HCP-Users mailing list
[email protected]
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.

_______________________________________________
HCP-Users mailing list
[email protected]
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Fwd: Regarding: fsl version 5.0.6

Reply via email to