Your data is RPI, but both label volumes are LPI. The -generic version doesn't accept that either, the current labels must be in the same volume space as the data. Maybe when you pulled the first volume off the data, it changed something?
Use -volume-reorient to get them to match, and it works. Tim On Thu, Apr 23, 2015 at 3:43 PM, Keith Jamison <[email protected]> wrote: > Here's a tar with the relevant data (only 1.6MB ... truncated the fmri to > a single volume): > > https://drive.google.com/folderview?id=0B-jUIqj-goJ9cVJWcGM5d05RTUk&usp=sharing > > -Keith > > > On Thu, Apr 23, 2015 at 3:25 PM, Glasser, Matthew <[email protected] > > wrote: > >> That seems like it shouldn’t be happening. Tim C. might need you to >> upload that data somewhere so that he can debug. >> >> There isn’t any downside to using the generic command, but in your >> situation it should not be necessary. >> >> Peace, >> >> Matt. >> >> From: Keith Jamison <[email protected]> >> Date: Thursday, April 23, 2015 at 3:21 PM >> To: "[email protected]" <[email protected]> >> Subject: [HCP-Users] Problem with wb_command -volume-parcel-resampling? >> dimension mismatch? >> >> Hi HCPers >> >> I'm running into an error when running SubcorticalProcessing.sh in the >> fMRISurface pipeline. Specifically, when it tries to run: >> wb_command -volume-parcel-resampling <fmri_timecourse>.nii.gz >> ROIs/ROIs.<voxres>.nii.gz ROIs/Atlas_ROIs.<voxres>.nii.gz .... >> >> I get an error saying "volume spacing or dimension mismatch". >> >> I confirmed that <fmri_timecourse> ROIs/ROIs.<voxres> >> ROIs/Atlas_ROIs.<voxres> all have the same dimensions and resolution, and I >> even tried using just the first volume in <fmri_timecourse> in case the 4th >> dimension mismatch was an issue. >> >> If I use wb_command -volume-parcel-resampling-generic it works just fine. >> >> 1. Am I misunderstanding the requirements for this command? Or is there >> something else going on? >> 2. Is there a downside to using -generic? >> >> I attached a more specific console log. >> >> Thanks! >> -Keith >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
