Hi HCPers I'm running into an error when running SubcorticalProcessing.sh in the fMRISurface pipeline. Specifically, when it tries to run: wb_command -volume-parcel-resampling <fmri_timecourse>.nii.gz ROIs/ROIs.<voxres>.nii.gz ROIs/Atlas_ROIs.<voxres>.nii.gz ....
I get an error saying "volume spacing or dimension mismatch". I confirmed that <fmri_timecourse> ROIs/ROIs.<voxres> ROIs/Atlas_ROIs.<voxres> all have the same dimensions and resolution, and I even tried using just the first volume in <fmri_timecourse> in case the 4th dimension mismatch was an issue. If I use wb_command -volume-parcel-resampling-generic it works just fine. 1. Am I misunderstanding the requirements for this command? Or is there something else going on? 2. Is there a downside to using -generic? I attached a more specific console log. Thanks! -Keith _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>wb_command -volume-parcel-resampling \ Results/rfMRI_REST1_PA/rfMRI_REST1_PA.nii.gz \ ROIs/ROIs.1.6.nii.gz \ ROIs/Atlas_ROIs.1.6.nii.gz \ .67945744023041523418 \ Results/rfMRI_REST1_PA/rfMRI_REST1_PA_AtlasSubcortical_s1.60.nii.gz \ -fix-zeros ERROR: volume spacing or dimension mismatch > fslinfo ROIs/ROIs.1.6.nii.gz data_type FLOAT32 dim1 113 dim2 136 dim3 113 dim4 1 datatype 16 pixdim1 1.600000 pixdim2 1.600000 pixdim3 1.600000 pixdim4 0.000000 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+ > fslinfo ROIs/Atlas_ROIs.1.6.nii.gz data_type FLOAT32 dim1 113 dim2 136 dim3 113 dim4 1 datatype 16 pixdim1 1.600000 pixdim2 1.600000 pixdim3 1.600000 pixdim4 0.000000 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+ > fslinfo Results/rfMRI_REST1_PA/rfMRI_REST1_PA data_type FLOAT32 dim1 113 dim2 136 dim3 113 dim4 900 datatype 16 pixdim1 1.600000 pixdim2 1.600000 pixdim3 1.600000 pixdim4 1.000000 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+
