Thanks Tim! Following your prior post on scripting XNAT downloads with curl I was able to get all the files.
Joe -- Joseph M. Orr, Ph.D. Assistant Professor Department of Psychology Texas A&M University College Station, TX On Tue, Oct 20, 2015 at 3:33 PM, Timothy B. Brown <tbbr...@wustl.edu> wrote: > Joseph, > > On 16 Oct 2015 at 17:14, Matthew Glasser <glass...@wustl.edu> wrote: > > > > I don’t know about that, but it was an oversight to leave this file out, > as I had intended for it to be available. From Glasser et al 2013 > Pipelines paper: > > > > "All these distortions are corrected in a single resampling step using > the “eddy” tool in FSL5 (Andersson et al., 2012; Sotiropoulos it et al., > this issue). > > Eddy also produces a text file that includes the modeled motion > parameters and the parameters of the eddy current fields. The first six > columns contain > > the rigidmotion parameters <x translation in mm> <y translation in mm> > <z translation in mm> <x rotation in radians> <y rotation in radians> <z > rotation in radians> > > and the last 10 contain the eddy current distortion parameters." > > The eddy_parameters file will be included in the Diffusion Preprocessed > package as of the next data release. > > In the meantime, assuming you have a ConnectomeDB account, you should be > able to retrieve the file using the XNAT REST API with a URI like the > following: > > > https://db.humanconnectome.org/data/projects/HCP_500/subjects/100307/experiments/100307_3T/resources/Diffusion_preproc/files/Diffusion/eddy/eddy_unwarped_images.eddy_parameters > > You will, of course, need to replace both occurrences of 100307 in the > above with the subject-id number for the subject for which you would like > to download the file. > > See > http://www.mail-archive.com/hcp-users%40humanconnectome.org/msg01347.html > for some further information and links about using the XNAT REST API. > > Tim > -- > Timothy B. Brown > Business & Technology Application Analyst III > Pipeline Developer (Human Connectome Project) > tbbrown(at)wustl.edu > ________________________________________ > The material in this message is private and may contain Protected > Healthcare Information (PHI). > If you are not the intended recipient, be advised that any unauthorized > use, disclosure, copying > or the taking of any action in reliance on the contents of this > information is strictly prohibited. > If you have received this email in error, please immediately notify the > sender via telephone or > return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
