Re: [HCP-Users] Script for DTIV1_to_Workbench.sh

Tue, 01 Mar 2016 02:53:05 -0800 

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Hi Vasudev

I am attaching the script. In order to run it, it assumes you have some global variables (set by the HCP Pipelines) already set. These are CARET7DIR and HCPPIPEDIR_Config.

If you don’t have those, then you need to set them at the terminal before running the script. You would do:

1) Copy the attached “WholeBrainFreeSurferTrajectoryLabelTableLut.txt” to a folder of your choice, e.g. named “MyLut”.

2) From the terminal run 
    export HCPPIPEDIR_Config=MyLut

3) From the terminal run
    export CARET7DIR=  WBcmdDir

   where WBcmdDir is the directory name where wb_command is installed at.

Cheers
Stam


On 29 Feb 2016, at 16:30, Dev vasu <[email protected]> wrote:

Dear Sir,

I have checked all the material and so far the script is not available, if in case you have the script please kindly forward it.


Thanks
Vasudev

On 29 February 2016 at 17:29, Stamatios Sotiropoulos <[email protected]> wrote:
Hi

This should be included in the HCP course material. Ideally in the future the Connectome Workbench could directly support such functionality.

Best
Stam



On 29 Feb 2016, at 11:51, Dev vasu <[email protected]> wrote:

 

Dear Sir,

I would like to visualize DTI eigen vector map on fractional anisotropy in workbench in your slides for DTI analysis, it was mentioned that this was done using script  DTIV1_to_Workbench.sh, could you please provide me some sample example of the script. I have sent the mail earlier but so far no one replied.


Thanks
Vasudev

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