Dear Sir, Where can i find the NIFTI file Whole_Brain_Trajectory_1.25.nii.gz, i have checked the entire tutorial but i could not find the file also i am incurring following error when i run DTIV1-to-Workbench.sh script
" Error: failed to open file /tmp_coord0000.nii.gz Image Exception : #22 :: ERROR: Could not open image /tmp_coord0000 terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted (core dumped) Cannot open volume /tmp_coord0001 for reading! Cannot open volume /tmp_coord0000 for reading! Cannot open volume /tmp_x2 for reading! Cannot open volume /tmp_sqrt_x2_y2 for reading! Cannot open volume /tmp_sqrt_x2_y2 for reading! Cannot open volume /tmp_theta for reading! Error: failed to open file /tmp_foo.nii.gz Image Exception : #22 :: ERROR: Could not open image /tmp_foo terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted (core dumped) cp: cannot stat ‘Whole_Brain_Trajectory_1.25.nii.gz’: No such file or directory ./DTIV1toWorkbench.sh: 43: ./DTIV1toWorkbench.sh: /wb_command: not found " Thanks Vasudev On 1 March 2016 at 11:59, Dev vasu <[email protected]> wrote: > Dear Sir, > > > Thanks for your help, its much appreciated. > > > Thanks > Vasudev > > On 1 March 2016 at 11:56, Stamatios Sotiropoulos < > [email protected]> wrote: > >> I am resending the script zipped, as it was removed by the mail system… >> >> >> >> >> >> On 1 Mar 2016, at 10:52, Stamatios Sotiropoulos < >> [email protected]> wrote: >> >> Hi Vasudev >> >> I am attaching the script. In order to run it, it assumes you have some >> global variables (set by the HCP Pipelines) already set. These are >> CARET7DIR and HCPPIPEDIR_Config. >> >> If you don’t have those, then you need to set them at the terminal before >> running the script. You would do: >> >> 1) Copy the attached “WholeBrainFreeSurferTrajectoryLabelTableLut.txt” to >> a folder of your choice, e.g. named “MyLut”. >> >> 2) From the terminal run >> export HCPPIPEDIR_Config=MyLut >> >> 3) From the terminal run >> export CARET7DIR= WBcmdDir >> >> where WBcmdDir is the directory name where wb_command is installed at. >> >> Cheers >> Stam >> >> >> On 29 Feb 2016, at 16:30, Dev vasu <[email protected]> >> wrote: >> >> Dear Sir, >> >> I have checked all the material and so far the script is not available, >> if in case you have the script please kindly forward it. >> >> >> Thanks >> Vasudev >> >> On 29 February 2016 at 17:29, Stamatios Sotiropoulos < >> [email protected]> wrote: >> >>> Hi >>> >>> This should be included in the HCP course material. Ideally in the >>> future the Connectome Workbench could directly support such functionality. >>> >>> Best >>> Stam >>> >>> >>> >>> On 29 Feb 2016, at 11:51, Dev vasu <[email protected]> >>> wrote: >>> >>> >>> >>> Dear Sir, >>> >>> I would like to visualize DTI eigen vector map on fractional anisotropy >>> in workbench in your slides for DTI analysis, it was mentioned that this >>> was done using script DTIV1_to_Workbench.sh, could you please provide me >>> some sample example of the script. I have sent the mail earlier but so far >>> no one replied. >>> >>> >>> Thanks >>> Vasudev >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> [email protected] >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >>> >>> >> >> <WholeBrainFreeSurferTrajectoryLabelTableLut.txt> >> <DTIV1_to_Workbench.sh> >> >> >> >> > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
