Hi Denis and all, Sorry for the confusion. The structural extended packages have been fixed/updated in ConnectomeDB for download there and in the CinaB hard drives being ordered, but we are doing some further checking/fixing before we go through the several day process of updating all of the data in Amazon S3. We’ll send out another announcement when S3 is up to date.
Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 [email protected] www.humanconnectome.org <http://www.humanconnectome.org/> From: Denis-Alexander Engemann [mailto:[email protected]] Sent: Monday, April 18, 2016 3:42 PM To: Jennifer Elam; [email protected] Subject: Re: [HCP-Users] structrual extended package for HCP_900 subjects on aws Hi Jenn, I checked it once more after having waited for a few days. The numbers remain incomplete. Essentially the data are not there for a good amount of subjects, it seems at least all MEG subjects from the 900 release. Can you confirm this? Or am I missing something? Cheers, Denis On Sat, Apr 16, 2016 at 11:51 AM Denis-Alexander Engemann <[email protected]> wrote: Great, thanks for the update! Something seems to have moved indeed, but not too much apparently. I just checked some 90 MEG subjects, and still the structural preprocessing is not fully complete. I'm not sure though if this may now have different reasons. Consider this script where I go through the MEG subjects to see what is available. https://gist.github.com/dengemann/e6a76197fb07c543120f8cc35ca495e1 For the HCP500 subjects I find "mri", "surf" and "label" subfoldes, the others only seem to have "stats". Is this expected? Denis On Fri, Apr 15, 2016 at 8:55 PM Jennifer Elam <[email protected]> wrote: Hi Denis and all HCP-Users, We now have all Structural Extended Preprocessed data packages available for ALL 900 Subjects Release (S900) subjects with structural MRI data (897 subjects) in ConnectomeDB. Yay! The structural extended packages includes outputs from Freesurfer that are not in the main Structural Preprocessed packages. The structural extended packages are included in the S900 Connectome in a Box, which is available for order now. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 [email protected] www.humanconnectome.org <http://www.humanconnectome.org/> From: Denis-Alexander Engemann [mailto:[email protected]] Sent: Monday, April 04, 2016 3:30 AM To: Jennifer Elam; [email protected] Subject: Re: [HCP-Users] structrual extended package for HCP_900 subjects on aws Dear Jenn, thanks for letting me know and for looking into it! Cheers, Denis On Fri, Apr 1, 2016 at 9:59 PM Jennifer Elam <[email protected]> wrote: Hi Denis, We’ve looked into the problem and have found that the structural extended data for 178 newly added subjects for S900 was inadvertently unpackaged and therefore not available for download in ConnectomeDB. We are working on fixing this and we’ll send out another message when its available. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 [email protected] www.humanconnectome.org From: [email protected] [mailto:[email protected]] On Behalf Of Denis-Alexander Engemann Sent: Thursday, March 31, 2016 3:24 AM To: [email protected] Subject: Re: [HCP-Users] structrual extended package for HCP_900 subjects on aws It turns out that the structural extended preprocessing package is not available for the new subjects. Is there any fix planned for this or is there a way to at least get some of the outputs from 'surf' and 'mri'? Denis On Tue, Mar 29, 2016 at 10:35 AM Denis-Alexander Engemann <[email protected]> wrote: Dear HCPers, it seems that the freesurfer files included in the structural extended subjects are not available on aws for the HCP_900 subjects, at least not for the MEG subjects. I am referring to the following outputs: ${subject}/T1w/${subject}/mri ${subject}/T1w/${subject}/surf ${subject}/T1w/${subject}/label Can anyone confirm? Cheers, Denis _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
