Hi Vasu, you just opened a thread that we've already been discussing for a while, see below.
Cheers, Denis On Wed, Apr 20, 2016 at 1:56 AM Denis-Alexander Engemann < [email protected]> wrote: > Hi Jenn, > > thanks for your reply, this is good news! > > Denis > > On Tue, Apr 19, 2016 at 7:10 PM Jennifer Elam <[email protected]> wrote: > >> Hi Denis and all, >> >> Sorry for the confusion. The structural extended packages have been >> fixed/updated in *ConnectomeDB* for download there and in the CinaB hard >> drives being ordered, but we are doing some further checking/fixing before >> we go through the several day process of updating all of the data in Amazon >> S3. We’ll send out another announcement when S3 is up to date. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Scientific Outreach, Human Connectome Project >> Washington University School of Medicine >> Department of Neuroscience, Box 8108 >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> [email protected] >> www.humanconnectome.org >> >> >> >> *From:* Denis-Alexander Engemann [mailto:[email protected]] >> *Sent:* Monday, April 18, 2016 3:42 PM >> >> >> *To:* Jennifer Elam; [email protected] >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> Hi Jenn, >> >> >> >> I checked it once more after having waited for a few days. The numbers >> remain incomplete. Essentially the data are not there for a good amount of >> subjects, it seems at least all MEG subjects from the 900 release. Can you >> confirm this? Or am I missing something? >> >> >> >> Cheers, >> >> Denis >> >> >> >> On Sat, Apr 16, 2016 at 11:51 AM Denis-Alexander Engemann < >> [email protected]> wrote: >> >> Great, thanks for the update! Something seems to have moved indeed, but >> not too much apparently. I just checked some 90 MEG subjects, and still the >> structural preprocessing is not fully complete. I'm not sure though if this >> may now have different reasons. >> >> >> >> Consider this script where I go through the MEG subjects to see what is >> available. >> >> https://gist.github.com/dengemann/e6a76197fb07c543120f8cc35ca495e1 >> >> >> >> For the HCP500 subjects I find "mri", "surf" and "label" subfoldes, the >> others only seem to have "stats". Is this expected? >> >> >> >> Denis >> >> >> >> On Fri, Apr 15, 2016 at 8:55 PM Jennifer Elam <[email protected]> >> wrote: >> >> Hi Denis and all HCP-Users, >> >> We now have all Structural Extended Preprocessed data packages available >> for ALL 900 Subjects Release (S900) subjects with structural MRI data (897 >> subjects) in ConnectomeDB. Yay! >> >> >> >> The structural extended packages includes outputs from Freesurfer that >> are not in the main Structural Preprocessed packages. The structural >> extended packages are included in the S900 Connectome in a Box, which is >> available for order now. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Scientific Outreach, Human Connectome Project >> >> >> Washington University School of Medicine >> >> Department of Neuroscience, Box 8108 >> >> >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> >> [email protected] >> www.humanconnectome.org >> >> >> >> *From:* Denis-Alexander Engemann [mailto:[email protected]] >> *Sent:* Monday, April 04, 2016 3:30 AM >> *To:* Jennifer Elam; [email protected] >> >> >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> Dear Jenn, >> >> >> >> thanks for letting me know and for looking into it! >> >> >> >> Cheers, >> >> Denis >> >> On Fri, Apr 1, 2016 at 9:59 PM Jennifer Elam <[email protected]> wrote: >> >> Hi Denis, >> >> We’ve looked into the problem and have found that the structural extended >> data for 178 newly added subjects for S900 was inadvertently unpackaged and >> therefore not available for download in ConnectomeDB. We are working on >> fixing this and we’ll send out another message when its available. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Outreach Coordinator, Human Connectome Project >> Washington University School of Medicine >> Department of Anatomy and Neurobiology, Box 8108 >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> [email protected] >> www.humanconnectome.org >> >> >> >> *From:* [email protected] [mailto: >> [email protected]] *On Behalf Of *Denis-Alexander >> Engemann >> *Sent:* Thursday, March 31, 2016 3:24 AM >> *To:* [email protected] >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> It turns out that the structural extended preprocessing package is not >> available for the new subjects. >> >> >> >> Is there any fix planned for this or is there a way to at least get some >> of the outputs from 'surf' and 'mri'? >> >> >> >> Denis >> >> >> >> On Tue, Mar 29, 2016 at 10:35 AM Denis-Alexander Engemann < >> [email protected]> wrote: >> >> Dear HCPers, >> >> >> >> it seems that the freesurfer files included in the structural extended >> subjects are not available on aws for the HCP_900 subjects, at least not >> for the MEG subjects. I am referring to the following outputs: >> >> >> >> ${subject}/T1w/${subject}/mri >> >> ${subject}/T1w/${subject}/surf >> >> ${subject}/T1w/${subject}/label >> >> >> >> Can anyone confirm? >> >> >> >> Cheers, >> >> Denis >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
