Hi Jenn, thanks for your reply, this is good news!
Denis On Tue, Apr 19, 2016 at 7:10 PM Jennifer Elam <[email protected]> wrote: > Hi Denis and all, > > Sorry for the confusion. The structural extended packages have been > fixed/updated in *ConnectomeDB* for download there and in the CinaB hard > drives being ordered, but we are doing some further checking/fixing before > we go through the several day process of updating all of the data in Amazon > S3. We’ll send out another announcement when S3 is up to date. > > > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > Washington University School of Medicine > Department of Neuroscience, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > [email protected] > www.humanconnectome.org > > > > *From:* Denis-Alexander Engemann [mailto:[email protected]] > *Sent:* Monday, April 18, 2016 3:42 PM > > > *To:* Jennifer Elam; [email protected] > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > Hi Jenn, > > > > I checked it once more after having waited for a few days. The numbers > remain incomplete. Essentially the data are not there for a good amount of > subjects, it seems at least all MEG subjects from the 900 release. Can you > confirm this? Or am I missing something? > > > > Cheers, > > Denis > > > > On Sat, Apr 16, 2016 at 11:51 AM Denis-Alexander Engemann < > [email protected]> wrote: > > Great, thanks for the update! Something seems to have moved indeed, but > not too much apparently. I just checked some 90 MEG subjects, and still the > structural preprocessing is not fully complete. I'm not sure though if this > may now have different reasons. > > > > Consider this script where I go through the MEG subjects to see what is > available. > > https://gist.github.com/dengemann/e6a76197fb07c543120f8cc35ca495e1 > > > > For the HCP500 subjects I find "mri", "surf" and "label" subfoldes, the > others only seem to have "stats". Is this expected? > > > > Denis > > > > On Fri, Apr 15, 2016 at 8:55 PM Jennifer Elam <[email protected]> wrote: > > Hi Denis and all HCP-Users, > > We now have all Structural Extended Preprocessed data packages available > for ALL 900 Subjects Release (S900) subjects with structural MRI data (897 > subjects) in ConnectomeDB. Yay! > > > > The structural extended packages includes outputs from Freesurfer that are > not in the main Structural Preprocessed packages. The structural extended > packages are included in the S900 Connectome in a Box, which is available > for order now. > > > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > > > Washington University School of Medicine > > Department of Neuroscience, Box 8108 > > > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > > [email protected] > www.humanconnectome.org > > > > *From:* Denis-Alexander Engemann [mailto:[email protected]] > *Sent:* Monday, April 04, 2016 3:30 AM > *To:* Jennifer Elam; [email protected] > > > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > Dear Jenn, > > > > thanks for letting me know and for looking into it! > > > > Cheers, > > Denis > > On Fri, Apr 1, 2016 at 9:59 PM Jennifer Elam <[email protected]> wrote: > > Hi Denis, > > We’ve looked into the problem and have found that the structural extended > data for 178 newly added subjects for S900 was inadvertently unpackaged and > therefore not available for download in ConnectomeDB. We are working on > fixing this and we’ll send out another message when its available. > > > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Outreach Coordinator, Human Connectome Project > Washington University School of Medicine > Department of Anatomy and Neurobiology, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > [email protected] > www.humanconnectome.org > > > > *From:* [email protected] [mailto: > [email protected]] *On Behalf Of *Denis-Alexander > Engemann > *Sent:* Thursday, March 31, 2016 3:24 AM > *To:* [email protected] > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > It turns out that the structural extended preprocessing package is not > available for the new subjects. > > > > Is there any fix planned for this or is there a way to at least get some > of the outputs from 'surf' and 'mri'? > > > > Denis > > > > On Tue, Mar 29, 2016 at 10:35 AM Denis-Alexander Engemann < > [email protected]> wrote: > > Dear HCPers, > > > > it seems that the freesurfer files included in the structural extended > subjects are not available on aws for the HCP_900 subjects, at least not > for the MEG subjects. I am referring to the following outputs: > > > > ${subject}/T1w/${subject}/mri > > ${subject}/T1w/${subject}/surf > > ${subject}/T1w/${subject}/label > > > > Can anyone confirm? > > > > Cheers, > > Denis > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
