Thanks for the update. It would be good to know what's the issue here. Luckily you can get the maximum number (29) of unrelated subjects from the S500 release. Please keep me posted.
Denis On Thu, 8 Sep 2016 at 21:18, Hodge, Michael <[email protected]> wrote: > > > Hi Denis, > > > > I checked, and the structural extended packages are not yet available on > AWS, but they are available via Aspera download. The person who publishes > data to AWS is out of the office until the 17th, but hopefully this data > can be put out there once he returns. The thing I’m not sure of is whether > or not there is a reason that data has not been able to be made available > on AWS, possibly having to do with production of Connectome-in-a-Box > drives. I’ll follow up on this, and hopefully the data can be published to > AWS soon. > > > > Regards, > > > > Mike > > > > > > *From:* [email protected] [mailto: > [email protected]] *On Behalf Of *Denis-Alexander > Engemann > *Sent:* Thursday, September 8, 2016 12:42 PM > *To:* Hodge, Michael <[email protected]>; Jennifer Elam < > [email protected]>; [email protected] > > > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > Hi there, > > > > I'm back on this after a few months. It seems we now have complete data > for 67 instead of 66 (May). Any news/progress on this front? > > Cheers, > Denis > > > > On Mon, May 9, 2016 at 5:40 PM Hodge, Michael <[email protected]> wrote: > > > > Hi Denis, > > > > We’ve had a number of system issues since Friday night stemming from a > power outage over the weekend that took out some equipment. Our Aspera > server was definitely in a bad state over the weekend, and we were unable > to download as of this morning. Some of the issues are still being worked > through, and we’re once again able to download from here. Things should be > going back to normal over the next couple of hours. You might try your > downloads again, and hopefully they will work. Let us know if you are > still unable to download via Aspera. > > > > Regards, > > > Mike Hodge > > > > > > *From:* [email protected] [mailto: > [email protected]] *On Behalf Of *Denis-Alexander > Engemann > *Sent:* Saturday, May 7, 2016 3:07 AM > *To:* Jennifer Elam <[email protected]>; [email protected] > > > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > > Hi Jenn, > > > > in the mean time we have tried downloading some of the packages available > via connectome DB. Using the most recent version of the Aspera client, > trying 3 different browsers, 3 different computers at different locations > including Mac and Windows the download never started (progress bar frozen > at 0). > > Would you have any suggestions how to access the files? > > Or has there been any progress with updating the files on AWS? > > > > Best, > > Denis > > > > On Wed, Apr 20, 2016 at 1:56 AM Denis-Alexander Engemann < > [email protected]> wrote: > > Hi Jenn, > > > > thanks for your reply, this is good news! > > > > Denis > > > > On Tue, Apr 19, 2016 at 7:10 PM Jennifer Elam <[email protected]> wrote: > > Hi Denis and all, > > Sorry for the confusion. The structural extended packages have been > fixed/updated in *ConnectomeDB* for download there and in the CinaB hard > drives being ordered, but we are doing some further checking/fixing before > we go through the several day process of updating all of the data in Amazon > S3. We’ll send out another announcement when S3 is up to date. > > > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > Washington University School of Medicine > Department of Neuroscience, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > [email protected] > www.humanconnectome.org > > > > *From:* Denis-Alexander Engemann [mailto:[email protected]] > *Sent:* Monday, April 18, 2016 3:42 PM > > > *To:* Jennifer Elam; [email protected] > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > Hi Jenn, > > > > I checked it once more after having waited for a few days. The numbers > remain incomplete. Essentially the data are not there for a good amount of > subjects, it seems at least all MEG subjects from the 900 release. Can you > confirm this? Or am I missing something? > > > > Cheers, > > Denis > > > > On Sat, Apr 16, 2016 at 11:51 AM Denis-Alexander Engemann < > [email protected]> wrote: > > Great, thanks for the update! Something seems to have moved indeed, but > not too much apparently. I just checked some 90 MEG subjects, and still the > structural preprocessing is not fully complete. I'm not sure though if this > may now have different reasons. > > > > Consider this script where I go through the MEG subjects to see what is > available. > > https://gist.github.com/dengemann/e6a76197fb07c543120f8cc35ca495e1 > > > > For the HCP500 subjects I find "mri", "surf" and "label" subfoldes, the > others only seem to have "stats". Is this expected? > > > > Denis > > > > On Fri, Apr 15, 2016 at 8:55 PM Jennifer Elam <[email protected]> wrote: > > Hi Denis and all HCP-Users, > > We now have all Structural Extended Preprocessed data packages available > for ALL 900 Subjects Release (S900) subjects with structural MRI data (897 > subjects) in ConnectomeDB. Yay! > > > > The structural extended packages includes outputs from Freesurfer that are > not in the main Structural Preprocessed packages. The structural extended > packages are included in the S900 Connectome in a Box, which is available > for order now. > > > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > > > Washington University School of Medicine > > Department of Neuroscience, Box 8108 > > > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > > [email protected] > www.humanconnectome.org > > > > *From:* Denis-Alexander Engemann [mailto:[email protected]] > *Sent:* Monday, April 04, 2016 3:30 AM > *To:* Jennifer Elam; [email protected] > > > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > Dear Jenn, > > > > thanks for letting me know and for looking into it! > > > > Cheers, > > Denis > > On Fri, Apr 1, 2016 at 9:59 PM Jennifer Elam <[email protected]> wrote: > > Hi Denis, > > We’ve looked into the problem and have found that the structural extended > data for 178 newly added subjects for S900 was inadvertently unpackaged and > therefore not available for download in ConnectomeDB. We are working on > fixing this and we’ll send out another message when its available. > > > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Outreach Coordinator, Human Connectome Project > Washington University School of Medicine > Department of Anatomy and Neurobiology, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > [email protected] > www.humanconnectome.org > > > > *From:* [email protected] [mailto: > [email protected]] *On Behalf Of *Denis-Alexander > Engemann > *Sent:* Thursday, March 31, 2016 3:24 AM > *To:* [email protected] > *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 > subjects on aws > > > > It turns out that the structural extended preprocessing package is not > available for the new subjects. > > > > Is there any fix planned for this or is there a way to at least get some > of the outputs from 'surf' and 'mri'? > > > > Denis > > > > On Tue, Mar 29, 2016 at 10:35 AM Denis-Alexander Engemann < > [email protected]> wrote: > > Dear HCPers, > > > > it seems that the freesurfer files included in the structural extended > subjects are not available on aws for the HCP_900 subjects, at least not > for the MEG subjects. I am referring to the following outputs: > > > > ${subject}/T1w/${subject}/mri > > ${subject}/T1w/${subject}/surf > > ${subject}/T1w/${subject}/label > > > > Can anyone confirm? > > > > Cheers, > > Denis > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
