We will have 3302 timepoints in total. On Tue, Mar 12, 2019 at 2:24 PM Glasser, Matthew <glass...@wustl.edu> wrote:
> What you concatenate is entirely up to the user, so you can set it up to > concatenate all the subject’s fMRI data if you like. An official HCP > Pipelines release in imminent, but we have a couple of last things we want > to get in there. We will be requiring FSL 6.0.1 going forward for all HCP > Pipelines, which was released yesterday. > > How many total timepoints will you have if you concatenate all of the fMRI > runs? > > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Yizhou Ma < > maxxx...@umn.edu> > Date: Tuesday, March 12, 2019 at 7:17 PM > To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: [HCP-Users] multirun ICA question > > Dear HCP experts, > > I am preprocessing some HCP-style data with the HCP preprocessing pipeline > and I have some questions regarding multirun ICA. Our functional data were > collected over two sessions. Session 1 has two resting scans (TR=0.8, > length=6.5min each). Session 2 has two resting scans (TR=0.8s, > length=6.5min each) and 3 task scans (TR=0.8s, length=6min each). In using > multiICAFIX it seems that only fMRI scans from the same session will be > automatically concatenated for ICA. Thus my questions are > 1) is there a way to adjust the pipeline to make multiICAFIX concatenate > my fMRI scans from both sessions? > and > 2) If not, will the length of scans in either session be long enough to > allow for adequate ICAFIX performance? > > Thank you very much, > Yizhou Ma > > PhD Candidate > Clinical Science and Psychopathology Research > Department of Psychology > University of Minnesota > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
