I see. Thanks. I will stay tuned for that. On Fri, Mar 15, 2019 at 4:28 PM Glasser, Matthew <glass...@wustl.edu> wrote:
> No that will be a separate pipeline we are working on. We’d like it > automated, which is an additional research project. > > Matt. > > From: Yizhou Ma <maxxx...@umn.edu> > Date: Friday, March 15, 2019 at 4:26 PM > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] multirun ICA question > > Thank you Matt. Just curious, will the tICA procedure in your new > manuscript be included in this new pipeline? > > On Tue, Mar 12, 2019 at 2:28 PM Glasser, Matthew <glass...@wustl.edu> > wrote: > >> That is quite similar to what we will be using for the HCP LifeSpan >> datasets. We do plan to retrain FIX including both HCP-YA and Lifespan >> datasets to make it a little more generalizable; however, that will be >> released at a later time when it is ready. >> >> Matt. >> >> From: Yizhou Ma <maxxx...@umn.edu> >> Date: Tuesday, March 12, 2019 at 7:26 PM >> To: Matt Glasser <glass...@wustl.edu> >> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: Re: [HCP-Users] multirun ICA question >> >> We will have 3302 timepoints in total. >> >> On Tue, Mar 12, 2019 at 2:24 PM Glasser, Matthew <glass...@wustl.edu> >> wrote: >> >>> What you concatenate is entirely up to the user, so you can set it up to >>> concatenate all the subject’s fMRI data if you like. An official HCP >>> Pipelines release in imminent, but we have a couple of last things we want >>> to get in there. We will be requiring FSL 6.0.1 going forward for all HCP >>> Pipelines, which was released yesterday. >>> >>> How many total timepoints will you have if you concatenate all of the >>> fMRI runs? >>> >>> Matt. >>> >>> From: <hcp-users-boun...@humanconnectome.org> on behalf of Yizhou Ma < >>> maxxx...@umn.edu> >>> Date: Tuesday, March 12, 2019 at 7:17 PM >>> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >>> Subject: [HCP-Users] multirun ICA question >>> >>> Dear HCP experts, >>> >>> I am preprocessing some HCP-style data with the HCP preprocessing >>> pipeline and I have some questions regarding multirun ICA. Our functional >>> data were collected over two sessions. Session 1 has two resting scans >>> (TR=0.8, length=6.5min each). Session 2 has two resting scans (TR=0.8s, >>> length=6.5min each) and 3 task scans (TR=0.8s, length=6min each). In using >>> multiICAFIX it seems that only fMRI scans from the same session will be >>> automatically concatenated for ICA. Thus my questions are >>> 1) is there a way to adjust the pipeline to make multiICAFIX concatenate >>> my fMRI scans from both sessions? >>> and >>> 2) If not, will the length of scans in either session be long enough to >>> allow for adequate ICAFIX performance? >>> >>> Thank you very much, >>> Yizhou Ma >>> >>> PhD Candidate >>> Clinical Science and Psychopathology Research >>> Department of Psychology >>> University of Minnesota >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >>> >>> ------------------------------ >>> >>> The materials in this message are private and may contain Protected >>> Healthcare Information or other information of a sensitive nature. If you >>> are not the intended recipient, be advised that any unauthorized use, >>> disclosure, copying or the taking of any action in reliance on the contents >>> of this information is strictly prohibited. If you have received this email >>> in error, please immediately notify the sender via telephone or return mail. >>> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
