Thank you Matt. Just curious, will the tICA procedure in your new manuscript be included in this new pipeline?
On Tue, Mar 12, 2019 at 2:28 PM Glasser, Matthew <glass...@wustl.edu> wrote: > That is quite similar to what we will be using for the HCP LifeSpan > datasets. We do plan to retrain FIX including both HCP-YA and Lifespan > datasets to make it a little more generalizable; however, that will be > released at a later time when it is ready. > > Matt. > > From: Yizhou Ma <maxxx...@umn.edu> > Date: Tuesday, March 12, 2019 at 7:26 PM > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] multirun ICA question > > We will have 3302 timepoints in total. > > On Tue, Mar 12, 2019 at 2:24 PM Glasser, Matthew <glass...@wustl.edu> > wrote: > >> What you concatenate is entirely up to the user, so you can set it up to >> concatenate all the subject’s fMRI data if you like. An official HCP >> Pipelines release in imminent, but we have a couple of last things we want >> to get in there. We will be requiring FSL 6.0.1 going forward for all HCP >> Pipelines, which was released yesterday. >> >> How many total timepoints will you have if you concatenate all of the >> fMRI runs? >> >> Matt. >> >> From: <hcp-users-boun...@humanconnectome.org> on behalf of Yizhou Ma < >> maxxx...@umn.edu> >> Date: Tuesday, March 12, 2019 at 7:17 PM >> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: [HCP-Users] multirun ICA question >> >> Dear HCP experts, >> >> I am preprocessing some HCP-style data with the HCP preprocessing >> pipeline and I have some questions regarding multirun ICA. Our functional >> data were collected over two sessions. Session 1 has two resting scans >> (TR=0.8, length=6.5min each). Session 2 has two resting scans (TR=0.8s, >> length=6.5min each) and 3 task scans (TR=0.8s, length=6min each). In using >> multiICAFIX it seems that only fMRI scans from the same session will be >> automatically concatenated for ICA. Thus my questions are >> 1) is there a way to adjust the pipeline to make multiICAFIX concatenate >> my fMRI scans from both sessions? >> and >> 2) If not, will the length of scans in either session be long enough to >> allow for adequate ICAFIX performance? >> >> Thank you very much, >> Yizhou Ma >> >> PhD Candidate >> Clinical Science and Psychopathology Research >> Department of Psychology >> University of Minnesota >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
