Michael,
In 1.8.7 we enabled -O3 optimization for C Intel compiler. May be the higher
level of optimization doesn't work on your machine (errors sound familiar, but
I may be wrong)
Could you please set CC to "icc -O2" and recompile the library, or fix the
config/intel-flags file (search 1.8.7 string to find the right place).
Thank you!
Elena
On Jun 24, 2011, at 4:01 PM, michael bane wrote:
> My hdf5 1.8.7 appears to build okay but my make check fails. This is on a Sci
> Linux box:
> uname -a
> Linux redqueen.rcs.manchester.ac.uk 2.6.18-238.1.1.el5 #1 SMP Tue Jan 18
> 18:49:37 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
>
> I attach the std out+err from my configure and make steps. And here is the
> detailed error
>
> [mccssmb2@redqueen hdf5-1.8.7]$
> /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -vv -o select 2>&1 |
> less
>
> For help use: /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -help
> Linked with hdf5 version 1.8 release 7
> Testing -- Configure definitions (config)
> Testing -- Encoding/decoding metadata (metadata)
> Testing -- Checksum algorithm (checksum)
> Testing -- Ternary Search Trees (tst)
> Testing -- Memory Heaps (heap)
> Testing -- Skip Lists (skiplist)
> Testing -- Reference Counted Strings (refstr)
> Testing -- Low-Level File I/O (file)
> Testing -- Generic Object Functions (objects)
> Testing -- Dataspaces (h5s)
> *** UNEXPECTED RETURN from H5Fopen is -1 line 188 in th5s.c
> HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
> #000: H5F.c line 1522 in H5Fopen(): unable to open file
> major: File accessability
> minor: Unable to open file
> #001: H5F.c line 1211 in H5F_open(): unable to open file: time = Fri Jun 24
> 12:41:23 2011
> , name = 'th5s.h5', tent_flags = 0
> major: File accessability
> minor: Unable to open file
> #002: H5FD.c line 1086 in H5FD_open(): open failed
> major: Virtual File Layer
> minor: Unable to initialize object
> #003: H5FDsec2.c line 348 in H5FD_sec2_open(): unable to open file: name =
> 'th5s.h5', errno = 2, error mess
> age = 'No such file or directory', flags = 0, o_flags = 0
> major: File accessability
> minor: Unable to open file
> ***cannot open the pre-created H5S_MAX_RANK test file (th5s.h5)
> Testing -- Dataspace coordinates (coords)
> Testing -- Shared Object Header Messages (sohm)
> Testing -- Attributes (attr)
> Testing -- Selections (select)
> large cube read from small cube has bad data! Line=2015
> large cube read from small cube has bad data! Line=2015
> large cube read from small cube has bad data! Line=2015
> large cube read from small cube has bad data! Line=2015
> large cube read from small cube has bad data! Line=2015
> large cube written from small cube has bad data! Line=2256
> large cube written from small cube has bad data! Line=2256
> large cube written from small cube has bad data! Line=2256
> large cube written from small cube has bad data! Line=2256
> large cube written from small cube has bad data! Line=2256
> large cube read from small cube has bad data! Line=2015
> large cube read from small cube has bad data! Line=2015
> {& much more of same}
>
>
> Many thanks, Michael
> <mkb_make.txt><mkb_configure.txt>_______________________________________________
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