I've tried setting CC as you said but at 'make' stage it's being ignored it
seems:
[mccssmb2@redqueen hdf5-1.8.7]$ make
Making all in src
make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
make all-am
make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
CC H5.lo
icc: command line warning #10120: overriding '-O2' with '-O3'
H5.c(532): (col. 3) remark: LOOP WAS VECTORIZED.
H5.c(532): (col. 3) remark: LOOP WAS VECTORIZED.
CC H5checksum.lo
icc: command line warning #10120: overriding '-O2' with '-O3'
CC H5dbg.lo
icc: command line warning #10120: overriding '-O2' with '-O3'
On 24 Jun 2011, at 19:43, Elena Pourmal wrote:
> Michael,
>
> In 1.8.7 we enabled -O3 optimization for C Intel compiler. May be the higher
> level of optimization doesn't work on your machine (errors sound familiar,
> but I may be wrong)
>
> Could you please set CC to "icc -O2" and recompile the library, or fix the
> config/intel-flags file (search 1.8.7 string to find the right place).
>
> Thank you!
>
> Elena
> On Jun 24, 2011, at 4:01 PM, michael bane wrote:
>
>> My hdf5 1.8.7 appears to build okay but my make check fails. This is on a
>> Sci Linux box:
>> uname -a
>> Linux redqueen.rcs.manchester.ac.uk 2.6.18-238.1.1.el5 #1 SMP Tue Jan 18
>> 18:49:37 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
>>
>> I attach the std out+err from my configure and make steps. And here is the
>> detailed error
>>
>> [mccssmb2@redqueen hdf5-1.8.7]$
>> /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -vv -o select 2>&1 |
>> less
>>
>> For help use: /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -help
>> Linked with hdf5 version 1.8 release 7
>> Testing -- Configure definitions (config)
>> Testing -- Encoding/decoding metadata (metadata)
>> Testing -- Checksum algorithm (checksum)
>> Testing -- Ternary Search Trees (tst)
>> Testing -- Memory Heaps (heap)
>> Testing -- Skip Lists (skiplist)
>> Testing -- Reference Counted Strings (refstr)
>> Testing -- Low-Level File I/O (file)
>> Testing -- Generic Object Functions (objects)
>> Testing -- Dataspaces (h5s)
>> *** UNEXPECTED RETURN from H5Fopen is -1 line 188 in th5s.c
>> HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
>> #000: H5F.c line 1522 in H5Fopen(): unable to open file
>> major: File accessability
>> minor: Unable to open file
>> #001: H5F.c line 1211 in H5F_open(): unable to open file: time = Fri Jun 24
>> 12:41:23 2011
>> , name = 'th5s.h5', tent_flags = 0
>> major: File accessability
>> minor: Unable to open file
>> #002: H5FD.c line 1086 in H5FD_open(): open failed
>> major: Virtual File Layer
>> minor: Unable to initialize object
>> #003: H5FDsec2.c line 348 in H5FD_sec2_open(): unable to open file: name =
>> 'th5s.h5', errno = 2, error mess
>> age = 'No such file or directory', flags = 0, o_flags = 0
>> major: File accessability
>> minor: Unable to open file
>> ***cannot open the pre-created H5S_MAX_RANK test file (th5s.h5)
>> Testing -- Dataspace coordinates (coords)
>> Testing -- Shared Object Header Messages (sohm)
>> Testing -- Attributes (attr)
>> Testing -- Selections (select)
>> large cube read from small cube has bad data! Line=2015
>> large cube read from small cube has bad data! Line=2015
>> large cube read from small cube has bad data! Line=2015
>> large cube read from small cube has bad data! Line=2015
>> large cube read from small cube has bad data! Line=2015
>> large cube written from small cube has bad data! Line=2256
>> large cube written from small cube has bad data! Line=2256
>> large cube written from small cube has bad data! Line=2256
>> large cube written from small cube has bad data! Line=2256
>> large cube written from small cube has bad data! Line=2256
>> large cube read from small cube has bad data! Line=2015
>> large cube read from small cube has bad data! Line=2015
>> {& much more of same}
>>
>>
>> Many thanks, Michael
>> <mkb_make.txt><mkb_configure.txt>_______________________________________________
>> Hdf-forum is for HDF software users discussion.
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>
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> [email protected]
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
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