Michael,
Then you have to modify intel-flags file (or did you already ?)
Elena
On Jun 25, 2011, at 1:30 PM, Michael Bane wrote:
> I've tried setting CC as you said but at 'make' stage it's being ignored it
> seems:
>
> [mccssmb2@redqueen hdf5-1.8.7]$ make
> Making all in src
> make[1]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
> make all-am
> make[2]: Entering directory `/software/hdf/5/1.8.7/hdf5-1.8.7/src'
> CC H5.lo
> icc: command line warning #10120: overriding '-O2' with '-O3'
> H5.c(532): (col. 3) remark: LOOP WAS VECTORIZED.
> H5.c(532): (col. 3) remark: LOOP WAS VECTORIZED.
> CC H5checksum.lo
> icc: command line warning #10120: overriding '-O2' with '-O3'
> CC H5dbg.lo
> icc: command line warning #10120: overriding '-O2' with '-O3'
>
>
> On 24 Jun 2011, at 19:43, Elena Pourmal wrote:
>
>> Michael,
>>
>> In 1.8.7 we enabled -O3 optimization for C Intel compiler. May be the higher
>> level of optimization doesn't work on your machine (errors sound familiar,
>> but I may be wrong)
>>
>> Could you please set CC to "icc -O2" and recompile the library, or fix the
>> config/intel-flags file (search 1.8.7 string to find the right place).
>>
>> Thank you!
>>
>> Elena
>> On Jun 24, 2011, at 4:01 PM, michael bane wrote:
>>
>>> My hdf5 1.8.7 appears to build okay but my make check fails. This is on a
>>> Sci Linux box:
>>> uname -a
>>> Linux redqueen.rcs.manchester.ac.uk 2.6.18-238.1.1.el5 #1 SMP Tue Jan 18
>>> 18:49:37 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
>>>
>>> I attach the std out+err from my configure and make steps. And here is the
>>> detailed error
>>>
>>> [mccssmb2@redqueen hdf5-1.8.7]$
>>> /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -vv -o select 2>&1
>>> | less
>>>
>>> For help use: /software/hdf/5/1.8.7/hdf5-1.8.7/test/.libs/lt-testhdf5 -help
>>> Linked with hdf5 version 1.8 release 7
>>> Testing -- Configure definitions (config)
>>> Testing -- Encoding/decoding metadata (metadata)
>>> Testing -- Checksum algorithm (checksum)
>>> Testing -- Ternary Search Trees (tst)
>>> Testing -- Memory Heaps (heap)
>>> Testing -- Skip Lists (skiplist)
>>> Testing -- Reference Counted Strings (refstr)
>>> Testing -- Low-Level File I/O (file)
>>> Testing -- Generic Object Functions (objects)
>>> Testing -- Dataspaces (h5s)
>>> *** UNEXPECTED RETURN from H5Fopen is -1 line 188 in th5s.c
>>> HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
>>> #000: H5F.c line 1522 in H5Fopen(): unable to open file
>>> major: File accessability
>>> minor: Unable to open file
>>> #001: H5F.c line 1211 in H5F_open(): unable to open file: time = Fri Jun 24
>>> 12:41:23 2011
>>> , name = 'th5s.h5', tent_flags = 0
>>> major: File accessability
>>> minor: Unable to open file
>>> #002: H5FD.c line 1086 in H5FD_open(): open failed
>>> major: Virtual File Layer
>>> minor: Unable to initialize object
>>> #003: H5FDsec2.c line 348 in H5FD_sec2_open(): unable to open file: name =
>>> 'th5s.h5', errno = 2, error mess
>>> age = 'No such file or directory', flags = 0, o_flags = 0
>>> major: File accessability
>>> minor: Unable to open file
>>> ***cannot open the pre-created H5S_MAX_RANK test file (th5s.h5)
>>> Testing -- Dataspace coordinates (coords)
>>> Testing -- Shared Object Header Messages (sohm)
>>> Testing -- Attributes (attr)
>>> Testing -- Selections (select)
>>> large cube read from small cube has bad data! Line=2015
>>> large cube read from small cube has bad data! Line=2015
>>> large cube read from small cube has bad data! Line=2015
>>> large cube read from small cube has bad data! Line=2015
>>> large cube read from small cube has bad data! Line=2015
>>> large cube written from small cube has bad data! Line=2256
>>> large cube written from small cube has bad data! Line=2256
>>> large cube written from small cube has bad data! Line=2256
>>> large cube written from small cube has bad data! Line=2256
>>> large cube written from small cube has bad data! Line=2256
>>> large cube read from small cube has bad data! Line=2015
>>> large cube read from small cube has bad data! Line=2015
>>> {& much more of same}
>>>
>>>
>>> Many thanks, Michael
>>> <mkb_make.txt><mkb_configure.txt>_______________________________________________
>>> Hdf-forum is for HDF software users discussion.
>>> [email protected]
>>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> [email protected]
>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> [email protected]
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
