Hullo All,
I can report a similar experience to the above with a Fedora build of
2010.1.0-svn4837.
I have a project that would always end up haywire prior to the
implementation of cpclean. I could only get a good result with
manually selected control points, so this project has become one of
those that I use to test any new version.
The result using 2010.1.0-svn4837 appears even more out of kilter than
I have seen previously. Removing obvious bad control points (between
non overlapping photos), re-optimising and running cpclean has little
or no effect. Roll angles have really bad values.
I have removed this version and reverted to 2009.4 but can re-install
and investigate further if needed.

Cheers,
Terry

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