samredai commented on a change in pull request #4081: URL: https://github.com/apache/iceberg/pull/4081#discussion_r810665375
########## File path: python/src/iceberg/io/pyarrow.py ########## @@ -0,0 +1,154 @@ +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +"""FileIO implementation for reading and writing table files that uses pyarrow.fs + +This file contains a FileIO implementation that relies on the filesystem interface provided +by PyArrow. It relies on PyArrow's `from_uri` method that infers the correct filesystem +type to use. Theoretically, this allows the supported storage types to grow naturally +with the pyarrow library. +""" + +import os +from typing import Union +from urllib.parse import urlparse + +from pyarrow.fs import FileSystem, FileType + +from iceberg.io.base import FileIO, InputFile, InputStream, OutputFile, OutputStream + + +class PyArrowFile(InputFile, OutputFile): + """A combined InputFile and OutputFile implementation that uses a pyarrow filesystem to generate pyarrow.lib.NativeFile instances + + Args: + location(str): A URI or a path to a local file + + Attributes: + location(str): The URI or path to a local file for a PyArrowFile instance + exists(bool): Whether the file exists or not + filesystem(pyarrow.fs.FileSystem): An implementation of the FileSystem base class inferred from the location + + Examples: + >>> from iceberg.io.pyarrow import PyArrowFile + >>> input_file = PyArrowFile("s3://foo/bar.txt") + >>> file_content = input_file.open().read() # Read the contents of the PyArrowFile instance + >>> output_file = PyArrowFile("s3://baz/qux.txt") + >>> output_file.create().write(b'foobytes') # Write bytes to the PyArrowFile instance + """ + + def __init__(self, location: str): + parsed_location = urlparse(location) # Create a ParseResult from the uri + if not parsed_location.scheme: # If no scheme, assume the path is to a local file + self._filesystem, self._path = FileSystem.from_uri(os.path.abspath(location)) + else: + self._filesystem, self._path = FileSystem.from_uri(location) # Infer the proper filesystem + super().__init__(location=location) + + def __len__(self) -> int: + """Returns the total length of the file, in bytes""" + file = self._filesystem.open_input_file(self._path) + return file.size() + + @property + def exists(self) -> bool: + """Checks whether the file exists""" + file_info = self._filesystem.get_file_info(self._path) + return False if file_info.type == FileType.NotFound else True + + def open(self) -> InputStream: + """Opens the location using a PyArrow FileSystem inferred from the location + + Returns: + pyarrow.lib.NativeFile: A NativeFile instance for the file located at `self.location` + """ + input_file = self._filesystem.open_input_file(self._path) + if not isinstance(input_file, InputStream): + raise TypeError( + f"Object of type {type(input_file)} returned from PyArrowFile.open does not match the InputStream protocol." + ) + return input_file + + def create(self, overwrite: bool = False) -> OutputStream: + """Creates a writable pyarrow.lib.NativeFile for this PyArrowFile's location + + Args: + overwrite(bool): Whether to overwrite the file if it already exists + + Returns: + pyarrow.lib.NativeFile: A NativeFile instance for the file located at self.location + + Raises: + FileExistsError: If the file already exists at `self.location` and `overwrite` is False + """ + if not overwrite and self.exists: + raise FileExistsError( + f"A file already exists at this location. If you would like to overwrite it, set `overwrite=True`: {self.location}" + ) + output_file = self._filesystem.open_output_stream(self._path) + if not isinstance(output_file, OutputStream): + raise TypeError( + f"Object of type {type(output_file)} returned from PyArrowFile.create(...) does not match the OutputStream protocol." + ) + return output_file + + def to_input_file(self) -> "PyArrowFile": + """Returns a new PyArrowFile for the location of an existing PyArrowFile instance + + This method is included to abide by the OutputFile abstract base class. Since this implementation uses a single + PyArrowFile class (as opposed to separate InputFile and OutputFile implementations), this method effectively returns + a copy of the same instance. + """ + return PyArrowFile(self.location) + + +class PyArrowFileIO(FileIO): + def new_input(self, location: str) -> PyArrowFile: + """Get a PyArrowFile instance to read bytes from the file at the given location + + Args: + location(str): A URI or a path to a local file + + Returns: + PyArrowFile: A PyArrowFile instance for the given location + """ + return PyArrowFile(location) + + def new_output(self, location: str) -> PyArrowFile: + """Get a PyArrowFile instance to write bytes to the file at the given location + + Args: + location(str): A URI or a path to a local file + + Returns: + PyArrowFile: A PyArrowFile instance for the given location + """ + return PyArrowFile(location) + + def delete(self, location: Union[str, InputFile, OutputFile]) -> None: + """Delete the file at the given location + + Args: + location(str, InputFile, OutputFile): The URI to the file--if an InputFile instance or an + OutputFile instance is provided, the location attribute for that instance is used as the location + to delete + """ + str_path = location.location if isinstance(location, (InputFile, OutputFile)) else location + filesystem, path = FileSystem.from_uri(str_path) # Infer the proper filesystem + try: + filesystem.delete_file(path) + except OSError: + raise FileNotFoundError(f"File could not be deleted because it does not exist: {str_path}") Review comment: I think this goes back to the inconsistency I described in my [other reply](https://github.com/apache/iceberg/pull/4081#discussion_r810664650). We could raise a more generic exception here and the user can see the more detailed pyarrow exception in the traceback: ```py from pyarrow.fs import FileSystem def delete(location): try: fs, path = FileSystem.from_uri(location) fs.delete_file(path) except Exception: raise RuntimeError(f"Cannot delete file: {location}") delete("s3://foo/bar.txt") ``` output: ```py OSError Traceback (most recent call last) <ipython-input-7-fd79114b19ff> in foo() 3 fs, path = FileSystem.from_uri("s3://foo/bar.txt") ----> 4 fs.delete_file(path) 5 except Exception: /usr/local/lib/python3.9/site-packages/pyarrow/_fs.pyx in pyarrow._fs.FileSystem.delete_file() /usr/local/lib/python3.9/site-packages/pyarrow/error.pxi in pyarrow.lib.check_status() OSError: When getting information for key 'bar.txt' in bucket 'foo': AWS Error [code 15]: No response body. During handling of the above exception, another exception occurred: RuntimeError Traceback (most recent call last) <ipython-input-8-c19b6d9633cf> in <module> ----> 1 foo() <ipython-input-7-fd79114b19ff> in foo() 4 fs.delete_file(path) 5 except Exception: ----> 6 raise RuntimeError("Cannot delete file: s3://foo/bar.txt") 7 8 RuntimeError: Cannot delete file: s3://foo/bar.txt ``` -- This is an automated message from the Apache Git Service. To respond to the message, please log on to GitHub and use the URL above to go to the specific comment. To unsubscribe, e-mail: [email protected] For queries about this service, please contact Infrastructure at: [email protected] --------------------------------------------------------------------- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
