On Friday 22 November 2002 14:37, mth wrote: > >> Q: Is it possible that you are running a different version of > >> javax.vecmath than the one that ships with Jmol? > > > > That might be... now that you ask me... the vecmath library comes from > > ... > > That jar I have also in the classpath... but I guess the Java3D vecmath > > gets loaded first as it is part of the JVM installation.... :( > > Can you try to run the software with the the jmol vecmath package? > Perhaps rename the .jar file so that the Java3D version doesn't get loaded > first ...
I've removeed them all... Same bug. jmolbug.log is attached... > > We can not expect people to deinstall Java3D, so we must find another > > way to solve this... > > Clearly we need to be able to run with the latest version of > javax.vecmath. (In fact, I have wondered about upgrading the jmol vecmath > to a newer version.) But it would be useful to know if this is part of the > problem. Looks like it is not... (Might still be a JVM problem...) Gonne try 1.4.1_03 now... Egon
Before home --------------- dimCurrent=java.awt.Dimension[width=385,height=284] chemframe.getRadius()=1.7375779 chemframe.getCenter()=(-0.06671786, -0.06392187, 0.0) scalePixelsPerAngstrom=81.14744 matrixRotate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixTranslate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixView=[ [81.14744 0.0 0.0 197.41399] [0.0 -81.14744 0.0 136.8129] [0.0 0.0 81.14744 192.0] [0.0 0.0 0.0 1.0] ] Atom{C #0 @(-0.7320712, 0.011056873, 0.0) @138,135,192} Atom{O #1 @(0.6987531, -0.06604863, 0.0) @254,142,192} Atom{H #2 @(0.9882976, 0.88191867, 0.0) @277,65,192} Atom{H #3 @(-1.1179007, -1.0097624, 0.0) @106,218,192} Atom{H #4 @(-1.1217333, 0.5222154, -0.886637) @106,94,120} Atom{H #5 @(-1.1217333, 0.5222154, 0.886637) @106,94,263} After home ---------------- dimCurrent=java.awt.Dimension[width=385,height=284] chemframe.getRadius()=1.7375779 chemframe.getCenter()=(-0.06671786, -0.06392187, 0.0) scalePixelsPerAngstrom=81.14744 matrixRotate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixTranslate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixView=[ [81.14744 0.0 0.0 197.41399] [0.0 -81.14744 0.0 136.8129] [0.0 0.0 81.14744 192.0] [0.0 0.0 0.0 1.0] ] Atom{C #0 @(-0.7320712, 0.011056873, 0.0) @138,135,192} Atom{O #1 @(0.6987531, -0.06604863, 0.0) @254,142,192} Atom{H #2 @(0.9882976, 0.88191867, 0.0) @277,65,192} Atom{H #3 @(-1.1179007, -1.0097624, 0.0) @106,218,192} Atom{H #4 @(-1.1217333, 0.5222154, -0.886637) @106,94,120} Atom{H #5 @(-1.1217333, 0.5222154, 0.886637) @106,94,263} --------------------------- Before home --------------- dimCurrent=java.awt.Dimension[width=385,height=284] chemframe.getRadius()=1.7375779 chemframe.getCenter()=(-0.06671786, -0.06392187, 0.0) scalePixelsPerAngstrom=81.14744 matrixRotate=[ [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 1.0] ] matrixTranslate=[ [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 1.0] ] matrixView=[ [0.0 0.0 0.0 192.0] [0.0 0.0 0.0 142.0] [0.0 0.0 0.0 192.0] [0.0 0.0 0.0 1.0] ] Atom{C #0 @(-0.7320712, 0.011056873, 0.0) @192,142,192} Atom{O #1 @(0.6987531, -0.06604863, 0.0) @192,142,192} Atom{H #2 @(0.9882976, 0.88191867, 0.0) @192,142,192} Atom{H #3 @(-1.1179007, -1.0097624, 0.0) @192,142,192} Atom{H #4 @(-1.1217333, 0.5222154, -0.886637) @192,142,192} Atom{H #5 @(-1.1217333, 0.5222154, 0.886637) @192,142,192} After home ---------------- dimCurrent=java.awt.Dimension[width=385,height=284] chemframe.getRadius()=1.7375779 chemframe.getCenter()=(-0.06671786, -0.06392187, 0.0) scalePixelsPerAngstrom=81.14744 matrixRotate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixTranslate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixView=[ [81.14744 0.0 0.0 197.41399] [0.0 -81.14744 0.0 136.8129] [0.0 0.0 81.14744 192.0] [0.0 0.0 0.0 1.0] ] Atom{C #0 @(-0.7320712, 0.011056873, 0.0) @192,142,192} Atom{O #1 @(0.6987531, -0.06604863, 0.0) @192,142,192} Atom{H #2 @(0.9882976, 0.88191867, 0.0) @192,142,192} Atom{H #3 @(-1.1179007, -1.0097624, 0.0) @192,142,192} Atom{H #4 @(-1.1217333, 0.5222154, -0.886637) @192,142,192} Atom{H #5 @(-1.1217333, 0.5222154, 0.886637) @192,142,192} --------------------------- Before home --------------- dimCurrent=java.awt.Dimension[width=385,height=284] chemframe.getRadius()=1.7375779 chemframe.getCenter()=(-0.06671786, -0.06392187, 0.0) scalePixelsPerAngstrom=81.14744 matrixRotate=[ [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 1.0] ] matrixTranslate=[ [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 0.0] [0.0 0.0 0.0 1.0] ] matrixView=[ [0.0 0.0 0.0 192.0] [0.0 0.0 0.0 142.0] [0.0 0.0 0.0 192.0] [0.0 0.0 0.0 1.0] ] Atom{C #0 @(-0.7320712, 0.011056873, 0.0) @192,142,192} Atom{O #1 @(0.6987531, -0.06604863, 0.0) @192,142,192} Atom{H #2 @(0.9882976, 0.88191867, 0.0) @192,142,192} Atom{H #3 @(-1.1179007, -1.0097624, 0.0) @192,142,192} Atom{H #4 @(-1.1217333, 0.5222154, -0.886637) @192,142,192} Atom{H #5 @(-1.1217333, 0.5222154, 0.886637) @192,142,192} After home ---------------- dimCurrent=java.awt.Dimension[width=385,height=284] chemframe.getRadius()=1.7375779 chemframe.getCenter()=(-0.06671786, -0.06392187, 0.0) scalePixelsPerAngstrom=81.14744 matrixRotate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixTranslate=[ [1.0 0.0 0.0 0.0] [0.0 1.0 0.0 0.0] [0.0 0.0 1.0 0.0] [0.0 0.0 0.0 1.0] ] matrixView=[ [81.14744 0.0 0.0 197.41399] [0.0 -81.14744 0.0 136.8129] [0.0 0.0 81.14744 192.0] [0.0 0.0 0.0 1.0] ] Atom{C #0 @(-0.7320712, 0.011056873, 0.0) @192,142,192} Atom{O #1 @(0.6987531, -0.06604863, 0.0) @192,142,192} Atom{H #2 @(0.9882976, 0.88191867, 0.0) @192,142,192} Atom{H #3 @(-1.1179007, -1.0097624, 0.0) @192,142,192} Atom{H #4 @(-1.1217333, 0.5222154, -0.886637) @192,142,192} Atom{H #5 @(-1.1217333, 0.5222154, 0.886637) @192,142,192} ---------------------------