Just don't put parentheses around your color option:
connect (atomno=442) (atomno=410) color green
connect (atomno=586) (atomno=266) color green
On Thu, Mar 18, 2010 at 1:02 PM, R. Kent Wenger <wen...@cs.wisc.edu> wrote:
> On Thu, 18 Mar 2010, Jonathan Gutow wrote:
>
> >
> > On Mar 18, 2010, at 12:35 PM, R. Kent Wenger wrote:
> >
> >> On Thu, 18 Mar 2010, Jonathan Gutow wrote:
> >>
> >>> Since you've selected your bonds in the connect command just follow
> >>> that line with
> >>>
> >>> color bond blue
> >>>
> >>> You can insert your favorite color:)
> >>
> >> So you're saying that the color part is an entirely separate command?
> > Yep. Probably best for you to spend a little time looking at the
> > scripting documentation:
> > http://chemapps.stolaf.edu/jmol/docs/
>
> Hmm. If I do this:
>
> connect (atomno=442) (atomno=410); connect (atomno=586) (atomno=266);
> color bond green;
>
> I end up with all of the bonds colored green, not just the ones I added.
> If I make the whole thing one command, I get an error.
>
> The documentation makes it look to me like you should be able to have a
> color option as part of the connect command, but I haven't been able to
> come up with any syntax that makes that work.
>
> I've looked at the documentation, but I'm still having a hard time
> understanding some of it. More examples would help, at least for me...
>
> Kent
> --
> R. Kent Wenger (wen...@cs.wisc.edu, 608-262-6627,
> http://www.cs.wisc.edu/~wenger/ <http://www.cs.wisc.edu/%7Ewenger/>)
> Computer Sciences Department
> University of Wisconsin-Madison
>
>
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