ah -- I see that's in Jmol 11.9.... In Jmol 11.8 it is a bit different. Use
OPAQUE or TRANSLUCENT instead of COLOR and the deal is that if you just say:
connect {atomno=442} {atomno=129} opaque cyan
then that bond already has to be there. (MODIFY assumed)
but if you are making a new bond, you need:
connect {atomno=442} {atomno=129} opaque cyan CREATE
and probably then will also want to set the radius as well:
connect {atomno=442} {atomno=129} opaque cyan radius 0.15 CREATE
Bob
2010/3/18 Angel Herráez <angel.herr...@uah.es>
> > Thanks much!
>
> Good!
>
> I forgot this: if you want to control later the connection visibility,
> color, etc., it's better to give it
> a name when created:
>
> draw myConnectionA diameter 0.2 {atomno=442} {atomno=410} color cyan;
>
> then
>
> draw myConnectionA off;
> draw myConnectionA on;
> color $myConnectionA green;
> etc.
> Also,
> draw list
> displays a list of all drawn objects with their names/IDs and properties
>
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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