Dear developers, I have committed code that updates the definition of the 'carbohydrate' atom set. This is based on a list of residue IDs (provided by Eric some time ago).
While working with some glycans in glycoproteins, I have found out a few common residues (N-acetyl-galactosamine and sialic acid) that were not included in the set, so I have added them in the list. While doing that, I reviewed the whole list against the PDB "Ligand Expo" site, http://ligand- expo.rcsb.org/ld-search.html and found out - that some listed residue IDs are now deprecated from the PDB. I have still left them in the list but have separated them and included a comment (in case we want to remove them in future) - that two listed residue IDs were not carbohydrates (maybe a typo), so I have removed them The list will now be documented at http://wiki.jmol.org/index.php/AtomSets Now my question: I'd like to introduce this change too in the 12.0.x series. Do you think it qualifies as a bug fix and so it can go there, or is it a change in behaviour and it should only go in the 12.1.x? Thanks for your views Angel ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers
