I vote for bug-fix and inclusion in 12.0

Jonathan
On Jun 29, 2011, at 1:35 PM, Angel Herráez wrote:

> Dear developers,
> 
> I have committed code that updates the definition of the 'carbohydrate' atom 
> set. This is 
> based on a list of residue IDs (provided by Eric some time ago).
> 
> While working with some glycans in glycoproteins, I have found out a few 
> common residues 
> (N-acetyl-galactosamine and sialic acid) that were not included in the set, 
> so I have added 
> them in the list.
> 
> While doing that, I reviewed the whole list against the PDB "Ligand Expo" 
> site, http://ligand-
> expo.rcsb.org/ld-search.html  and found out 
> - that some listed residue IDs are now deprecated from the PDB. I have still 
> left them in the 
> list but have separated them and included a comment (in case we want to 
> remove them in 
> future)
> - that two listed residue IDs were not carbohydrates (maybe a typo), so I 
> have removed them
> 
> The list will now be documented at http://wiki.jmol.org/index.php/AtomSets
> 
> 
> Now my question:
> I'd like to introduce this change too in the 12.0.x series. Do you think it 
> qualifies as a bug fix 
> and so it can go there, or is it a change in behaviour and it should only go 
> in the 12.1.x?
> 
> Thanks for your views
> Angel
> 
> 
> 
> 
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                         Dr. Jonathan H. Gutow
Chemistry Department                                gu...@uwosh.edu
UW-Oshkosh                                          Office: 920-424-1326
800 Algoma Boulevard                                FAX:920-424-2042
Oshkosh, WI 54901
                http://www.uwosh.edu/facstaff/gutow


------------------------------------------------------------------------------
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of application performance, security 
threats, fraudulent activity, and more. Splunk takes this data and makes 
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
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