My first conclusion is that this is not an applet issue, it's a 
JavaScript/LiveConnect issue. ALL applets of any kind must report 
something for

document.getElementById(appletId).getAppletInfo()

That's a given. So if that is in error, then it doesn't have to do with 
Jmol.

I would be interested in seeing if someone on these macs can load a pop 
up window with any other applet whatsoever, with object ID="theApplet" 
and deliver through a link:

javascript:alert(document.getElementById("theApplet").getAppletInfo())

We need to see if that also gives the malformed URL report.

Bob


Philip Bays wrote:

> OK.   Obviously your hours are different from mine:-)
>
> Just to give you a thorough observation.   I am using Safari on a 500 
> MHz (old) G4 Mac.  But I observe the same thing on my office Intel 
> imac. I am using Safari with the javascript console turned on.  All of 
> the messages appear in that console.
>
> I have accessed your documents page at: 
> http://www.stolaf.edu/academics/chemapps/jmol/docs
>
> I have chosen the "atom expressions" example.
>
> I get a pop-up window into which a structure loads (1CRN?).  The 
> applet itself seems to work -- rotate, contextual menu, etc.
>
> Along the right side of the Jmol applet are a series of links.  
> Choosing any one of them gives the following error message in the 
> JavaScript console.   The first link actually produces the error 
> message twice.  In every case the line number is 10.
>
> Error - java.net.MalformedURLException: no protocol:
> http://www.stolaf.edu/academics/chemapps/jmol/docs/popupscript.js   
>
> If I paste any of the scripts you suggested into the script window, I 
> get only the first part of the message with no html reference, but a 
> line number reference as line 1:
>
> java.net.MalformedURLException: no protocol:
>
> I thought when I copied these errors last night the line numbers came 
> along for the ride.   Apparently they do not. Sorry.
>
> Hope this helps.
>
> Phil
>
> On Aug 18, 2006, at 11:00 PM, Bob Hanson wrote:
>
>> so where is this message appearing?
>>
>>
>>
>> -------------------------------------------------------------------------
>> Using Tomcat but need to do more? Need to support web services, security?
>> Get stuff done quickly with pre-integrated technology to make your 
>> job easier
>> Download IBM WebSphere Application Server v.1.0.1 based on Apache 
>> Geronimo
>> http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 
>> <http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642>
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected] 
>> <mailto:[email protected]>
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
> J. Philip Bays
>
> Professor of Chemistry
>
> Science Hall 158
>
> Saint Mary's College
>
> Notre Dame  IN  46556
>
> (574) 284-4663
>
>
>------------------------------------------------------------------------
>
>-------------------------------------------------------------------------
>Using Tomcat but need to do more? Need to support web services, security?
>Get stuff done quickly with pre-integrated technology to make your job easier
>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
>
>------------------------------------------------------------------------
>
>_______________________________________________
>Jmol-users mailing list
>[email protected]
>https://lists.sourceforge.net/lists/listinfo/jmol-users
>  
>


-------------------------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
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