Karl Oberholser wrote: >> >> >>>>>Bob Hanson <[EMAIL PROTECTED]> 10/8/2007 2:32 PM >>> >>>>> >>>>> >>Karl Oberholser wrote: >> >> >> >>> >>>I am making a tutorial in which I want to overlay several Ramachandran >>>plots, but I have not been able to find a command that will display >>>selected frames out of a series frames, e.g. display frames 2.1, 4.1, >>>6.1, but not 1.1, 3.1, 5.1. There must be such a command. What am I >>>over looking? >>> >>> >>before using >> >> display 2.1,4.1,6.1 >> >>you need to make all the frames "displayable" using: >> >> frame 0.0 >> >>So the sequence is: >> >> frame 0.0;display 2.1,4.1,6.1 >> >> > >This sequence results in a blank display, but if I do the 'move to' that I >use when I make the plot (I have been using the 'move to' to center the >plot.) then the plots come into focus. > > > ah, yes. When you go to the Ramachandran "data frame" Jmol remembers where you rotated that frame last time you were there and does the rotation/centering for you. Displaying multiple frames makes that ambiguous, and I suppose I have it set to ignore the data frame orientation. I think I can correct that. But that makes sense, what you observe.
>I would like each set of points to have a different color, and I set the >color when doing ramachandran, but when the multiple frames are displayed >all points have the color of the last plot frame made. > > > make sure when you select atoms to color them that you do so only within the current frame. A good method is select helix and visible select *:1 and visible etc. >When doing ramachandran multiple times, the axis only appears in the first >display of the results. > > > That should be a simple fix. I'll try to look at it. >Karl > > > >>Bob >> >> >> >> >> >>> >>>Karl >>> >>> >>>------------------------------------------------------------------------ >>> >>>------------------------------------------------------------------------- >>>This SF.net email is sponsored by: Splunk Inc. >>>Still grepping through log files to find problems? Stop. >>>Now Search log events and configuration files using AJAX and a browser. >>>Download your FREE copy of Splunk now >> http://get.splunk.com/ >>> >>>------------------------------------------------------------------------ >>> >>>_______________________________________________ >>>Jmol-users mailing list >>>[email protected] >>>https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >>> >>> >>-- >>Robert M. Hanson >>Professor of Chemistry >>St. Olaf College >>Northfield, MN >>http://www.stolaf.edu/people/hansonr >> >> >>If nature does not answer first what we want, >>it is better to take what answer we get. >> >>-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> >> >>------------------------------------------------------------------------- >>This SF.net email is sponsored by: Splunk Inc. >>Still grepping through log files to find problems? Stop. >>Now Search log events and configuration files using AJAX and a browser. >>Download your FREE copy of Splunk now >> http://get.splunk.com/ >>_______________________________________________ >>Jmol-users mailing list >>[email protected] >>https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Splunk Inc. >Still grepping through log files to find problems? Stop. >Now Search log events and configuration files using AJAX and a browser. >Download your FREE copy of Splunk now >> http://get.splunk.com/ >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
