Jmol wasn't set up for changing the C in CH4 to anything. It is now... But I can't upload it just yet.
On Thu, Jun 3, 2010 at 3:31 PM, Otis Rothenberger <[email protected]>wrote: > Bob, > > > > > >> >> > how exactly did you get this? > > > Use Jmol menu to start model kit mode; select new to load methane; select N > as substitution atom; click methane carbon. > > If it helps, there has been an ongoing issue with AHx in Jmol before the > model kit. I called it to your attention a while back, and you indicated it > was realted to Jmol defaults. The issue was that if you delete all the > hydrogens in AHx, then you cannot do an addHydrogens. Actually, Jmol use to > lock up if you tried it on CH4. Since my original note this issue became > erratic, so I did not bring it up because symptoms were not always > reproducible. I don't knw if this is related to what I'm seeing above. > Interestingly, SMI23D chokes on CH4! > > On the other issues, the scripting hooks were the really important point. > The menu load is not that big of an issue. > > Otis > > > > > >> 2) In conjunction with the above question, is there a scripting hook to >> turn this feature (auto bond) on and off? >> >> 3) Generalizing the above point, do you have a list of model kit related >> scripting hooks (set commands) to control some of the menu features with >> external links or buttons? >> >> > They definitely are just script commands. The listing is pretty easy to > read. It's in < > http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/src/org/jmol/modelkit/modelKitPopupResourceBundle.java> > > > All the menu items of the form "assign.....P!CB" correlate with the script > command > > set picking assign..... > > The rest are listed below that in an array. Ignore "clearQ" -- that just > tells Jmol to reset the menu items that have question marks in them. > > > 4) Is a model kit load menu similar to the Jmol load menu command a >> possibility? >> > > eventually, maybe. Not right now. > >> >> Otis >> >> -- >> Otis Rothenbergerchemagic.com >> >> >> >> ------------------------------------------------------------------------------ >> ThinkGeek and WIRED's GeekDad team up for the Ultimate >> GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the >> lucky parental unit. See the prize list and enter to win: >> http://p.sf.net/sfu/thinkgeek-promo >> _______________________________________________ >> Jmol-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > ------------------------------------------------------------------------------ > ThinkGeek and WIRED's GeekDad team up for the Ultimate > GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the > lucky parental unit. See the prize list and enter to win: > http://p.sf.net/sfu/thinkgeek-promo > > > _______________________________________________ > Jmol-users mailing > [email protected]https://lists.sourceforge.net/lists/listinfo/jmol-users > > > -- > Otis Rothenbergerchemagic.com > > > > ------------------------------------------------------------------------------ > ThinkGeek and WIRED's GeekDad team up for the Ultimate > GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the > lucky parental unit. See the prize list and enter to win: > http://p.sf.net/sfu/thinkgeek-promo > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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