Bug or Feature? "display WITHIN(2.0, selected)" does not hide isosurface. Script below.
Thanks, --Chuck # Test script load http://pdb.rcsb.org/pdb/files/1CRN.pdb; # Show the helices subset; select {[ILE]7:A or [VAL]8:A or [ALA]9:A or [ARG]10:A or [SER]11:A or [ASN]12:A or [PHE]13:A or [ASN]14:A or [VAL]15:A or [CYS]16:A or [ARG]17:A or [LEU]18:A or [PRO]19:A or [GLU]23:A or [ALA]24:A or [ILE]25:A or [CYS]26:A or [ALA]27:A or [THR]28:A or [TYR]29:A or [THR]30:A}; structure HELIX {{[ILE]7:A or [VAL]8:A or [ALA]9:A or [ARG]10:A or [SER]11:A or [ASN]12:A or [PHE]13:A or [ASN]14:A or [VAL]15:A or [CYS]16:A or [ARG]17:A or [LEU]18:A or [PRO]19:A or [GLU]23:A or [ALA]24:A or [ILE]25:A or [CYS]26:A or [ALA]27:A or [THR]28:A or [TYR]29:A or [THR]30:A}}; color ribbons structure; ribbons 1.66; # Show the sheet subset; select {[THR]1:A or [THR]2:A or [CYS]3:A or [CYS]4:A or [CYS]32:A or [ILE]33:A or [ILE]34:A or [ILE]35:A}; structure SHEET {{[THR]1:A or [THR]2:A or [CYS]3:A or [CYS]4:A or [CYS]32:A or [ILE]33:A or [ILE]34:A or [ILE]35:A}}; color ribbons structure; ribbons 1.66; # Show the turns subset; select {[PRO]5:A or [SER]6:A or [GLY]20:A or [THR]21:A or [PRO]22:A or [GLY]31:A or [PRO]36:A or [GLY]37:A or [ALA]38:A or [THR]39:A or [CYS]40:A or [PRO]41:A or [GLY]42:A or [ASP]43:A or [TYR]44:A or [ALA]45:A or [ASN]46:A}; structure TURN {{[PRO]5:A or [SER]6:A or [GLY]20:A or [THR]21:A or [PRO]22:A or [GLY]31:A or [PRO]36:A or [GLY]37:A or [ALA]38:A or [THR]39:A or [CYS]40:A or [PRO]41:A or [GLY]42:A or [ASP]43:A or [TYR]44:A or [ALA]45:A or [ASN]46:A}}; color ribbons structure; ribbons 1.66; # Show the isosurface for Chain A subset; parallel makeIsos{process{ subset; select {A and PROTEIN}; isoSurface surfaceA select(within(chain,*:A)) ignore (within(chain,not *:A)) VDW 90 % color TRANSLUCENT 230.4 [192,208,255] NOFILL molecular;}}; set multiProcessor true; show mulitProcessor; makeIsos; # Select 6 amino acids, hide everything that isn't selected, then display anything within 100.0 VDW radii of the amino acids' atoms subset; select {{PROTEIN and {[THR]1:A or [THR]2:A or [CYS]3:A or [CYS]4:A or [PRO]5:A or [SER]6:A}}}; hide not selected; display WITHIN(100.0, selected); # now display within 2 VDW radiis the selection # NOTE: the isosurface doesn't behave like the structures. The entire isosurface continues to be displayed. # QUESTION: Is this a bug or a feature? display WITHIN(2.0, selected); ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
