Dear List A question on how to rotate two structures simultaneously. In a Jmol Applet, the following script is executed (exemplified):
[begin of script] load protein.pdb load APPEND pqr::protein_charge_distribution.pqr select 1.1 ribbon only select 2.1 set propertycolorscheme "bwr" color property partialcharge range -1.0 1.0 spacefill 100% //At this point, the protein displays nicely as a ribbon structure //where some charges are superimposed as pink spheres. //In the PQR file, the charges range from -1.0 to +1.0, so I //was hoping to see different colors. //If i now open a console and enter the "set propertycolorscheme \"bwr\"" //and "color property partialcharge range -1.0 1.0" command again //the spheres turn from pink to white. //Nevermind, now I want to enable that both the ribbon structure and the charges //can be rotated by the user (using alt+<LEFT_MOUSE>) select 1.1, 2.1 set allowRotateSelected True [end of script] Unfortunately, only the charges are rotatable and naturally the superposition with the ribbon structure is lost. However, if I enter the command "select 1.1, 2.1" into a console (after the jmol applet loaded), the ribbon as well as the charges distribution become rotatable exactly in the way as I wish. Its just not so by default which I would like to enable. Thank you for any feedback on this. Martin Hediger ------------------------------------------------------------------------------ Special Offer -- Download ArcSight Logger for FREE! Finally, a world-class log management solution at an even better price-free! And you'll get a free "Love Thy Logs" t-shirt when you download Logger. Secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsisghtdev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
