Hi I was following the Jmol wiki on support for bond orders (http://wiki.jmol.org/index.php/Support_for_bond_orders) which said, "PDB can do double bonds using a trick: specify twice each CONECT record, or put the second atom twice in the same record." I tried modifying several files in in this manner on my own and I also found an example file online with this format with no luck. (http://www.umass.edu/microbio/rasmol/faq_em.htm#doublebonds )
The only way I was able to observe double bonds was to make a specific selection and use the command "bondorder 2". Any suggestions? Thanks Sara ________________________________________ From: Angel Herráez [angel.herr...@uah.es] Sent: Friday, September 30, 2011 7:39 PM To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Double Bonds Hi Sara That's the correct command. But has your file that info? What is the format? Can you show an example? ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2dcopy2 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2dcopy1 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
