Before you get too excited about this, please try:
set pdbAddHydrogens
load "xxxx.pdb"
Now, if this really is NOT a PDB file (which I guess that is not) consider
reading the PDB LIGAND entry for fumarate instead.
Why are you using PDB here, by the way?
On Mon, Oct 3, 2011 at 10:00 AM, Sara Bonner <bonn...@mit.edu> wrote:
> HI Angel
>
> I didn't realize jmol scrip could be incorporated into a pdb! This is
> wonderful. I will give it a try.
>
> I've attached the format example for inserting double bonds using CONECT in
> a pdb. I was unable to see double bonds when I loaded this file or modified
> other files using this format.
>
> Thanks
> Sara
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
All the data continuously generated in your IT infrastructure contains a
definitive record of customers, application performance, security
threats, fraudulent activity and more. Splunk takes this data and makes
sense of it. Business sense. IT sense. Common sense.
http://p.sf.net/sfu/splunk-d2dcopy1
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