Sara, maybe the best way to force the double bonds is to declare them using the "connect" command in Jmol script [1]. You can also embed that command in the pdb file itself [2].
1. http://chemapps.stolaf.edu/jmol/docs/#connect 2. http://wiki.jmol.org/index.php/File_formats/Scripting#Script_inline_wi thin_a_molecular_coordinates_file But anyway, the old method of using CONECT records in the pdb file must work. Do you have an example file whre CONECT has failed? ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2dcopy1 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
