Bob:
I did find that in Safari Preferences>security>java there is a list of trusted
sites. Somehow I was able to get Local documents onto that list. So JSmol
does work at this point, I think. I will look at the new release and see how
that works. Unfortuanetly, preparing for company at the moment.
On Nov 25, 2013, at 5:05 PM, Robert Hanson <[email protected]> wrote:
> easy fix - it's in the applet's menu.
>
>
> On Mon, Nov 25, 2013 at 3:05 PM, <[email protected]> wrote:
> Good to see that the Java certification issue seems to be sorted.
>
> With respect to bug-fix requests, I'm still experiencing the following
> problem:
>
> calling:
>
> load =3fsx.cif filter "ASSEMBLY 1"
>
> works in the Java application *only*. That is, it
> causes the Java Applet to 'hang' and produces the following error using JSmol:
>
> File Error:ERROR creating model: TypeError:
> biomolecules.get(...).get(...) is null
> script ERROR: ERROR creating model: TypeError:
> biomolecules.get(...).get(...) is null
> ----
> load "=3fsx.cif" filter >> "ASSEMBLY 1" <<
>
> I'm seeing this whereever I try it (various machines, various web sites,
> and with various pdb mmcifs)
> so I suspect it is a genuine bug?
>
> Cheers
>
> Simon
>
> NB. load =3fsx.cif filter "ASSEMBLY 2" works fine - its just the
> '1_555' assembly that hangs
>
>
>
> Quoting Robert Hanson <[email protected]>:
>
> > Seems to me it's been over a year since we went Jmol 13, and in that time
> > all the business of JSmol and Java issues and integration with JSpecView
> > and JSME have come to pass. Time for a new major version number, I think.
> >
> > I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the end
> > of the week. Please send all bug fix requests as soon as possible directly
> > to this list.
> >
> > Very latest, with fixes for mouse wheel binding, load monitor transparency,
> > load() function security, local JNLP applet loading, new _use _jar and _j2s
> > URL options, but not Safari local applet loading, can be found at
> >
> > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.25.zip
> >
> > Bob
> >
> > --
> > Robert M. Hanson
> > Larson-Anderson Professor of Chemistry
> > St. Olaf College
> > Northfield, MN
> > http://www.stolaf.edu/people/hansonr
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
>
>
>
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>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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Philip Bays
Emeritus Professor of Chemistry
Saint Mary's College
Notre Dame, IN 46556
[email protected]
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