Excellent - it works! Thanks very much
Simon Quoting Robert Hanson <[email protected]>: > please try > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.25c.zip > > Not only was there an issue with the applet, Jmol was not filtering the > atoms correctly, either. These look MUCH better! > > > > On Mon, Nov 25, 2013 at 3:05 PM, <[email protected]> wrote: > >> Good to see that the Java certification issue seems to be sorted. >> >> With respect to bug-fix requests, I'm still experiencing the following >> problem: >> >> calling: >> >> load =3fsx.cif filter "ASSEMBLY 1" >> >> works in the Java application *only*. That is, it >> causes the Java Applet to 'hang' and produces the following error using >> JSmol: >> >> File Error:ERROR creating model: TypeError: >> biomolecules.get(...).get(...) is null >> script ERROR: ERROR creating model: TypeError: >> biomolecules.get(...).get(...) is null >> ---- >> load "=3fsx.cif" filter >> "ASSEMBLY 1" << >> >> I'm seeing this whereever I try it (various machines, various web sites, >> and with various pdb mmcifs) >> so I suspect it is a genuine bug? >> >> Cheers >> >> Simon >> >> NB. load =3fsx.cif filter "ASSEMBLY 2" works fine - its just the >> '1_555' assembly that hangs >> >> >> >> Quoting Robert Hanson <[email protected]>: >> >> > Seems to me it's been over a year since we went Jmol 13, and in that time >> > all the business of JSmol and Java issues and integration with JSpecView >> > and JSME have come to pass. Time for a new major version number, I think. >> > >> > I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the >> end >> > of the week. Please send all bug fix requests as soon as possible >> directly >> > to this list. >> > >> > Very latest, with fixes for mouse wheel binding, load monitor >> transparency, >> > load() function security, local JNLP applet loading, new _use _jar and >> _j2s >> > URL options, but not Safari local applet loading, can be found at >> > >> > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.25.zip >> > >> > Bob >> > >> > -- >> > Robert M. Hanson >> > Larson-Anderson Professor of Chemistry >> > St. Olaf College >> > Northfield, MN >> > http://www.stolaf.edu/people/hansonr >> > >> > >> > If nature does not answer first what we want, >> > it is better to take what answer we get. >> > >> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> > >> >> >> >> >> ------------------------------------------------------------------------------ >> Shape the Mobile Experience: Free Subscription >> Software experts and developers: Be at the forefront of tech innovation. >> Intel(R) Software Adrenaline delivers strategic insight and game-changing >> conversations that shape the rapidly evolving mobile landscape. Sign up >> now. >> http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk >> _______________________________________________ >> Jmol-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > ------------------------------------------------------------------------------ Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
