Well, maybe. It is just listed as Local Documents under manage websites. And
you have a variety of choices: Ask, Block, Allow, Always allow. Mine was set
to Allow so I changed it to Block. Cleared history and caches, restarted
safari, and the jsmol still runs. But that is probably expected since it is
not Java. DUH.
However, the java choices do not on the older version of jmol.
On Nov 25, 2013, at 5:17 PM, Robert Hanson <[email protected]> wrote:
> So the secret is how to get the local file system into the allowed web sites
> list. OK. Pray tell.....
>
>
> On Mon, Nov 25, 2013 at 4:15 PM, Philip Bays <[email protected]> wrote:
> Bob:
> I did find that in Safari Preferences>security>java there is a list of
> trusted sites. Somehow I was able to get Local documents onto that list. So
> JSmol does work at this point, I think. I will look at the new release and
> see how that works. Unfortuanetly, preparing for company at the moment.
>
>
> On Nov 25, 2013, at 5:05 PM, Robert Hanson <[email protected]> wrote:
>
>> easy fix - it's in the applet's menu.
>>
>>
>> On Mon, Nov 25, 2013 at 3:05 PM, <[email protected]> wrote:
>> Good to see that the Java certification issue seems to be sorted.
>>
>> With respect to bug-fix requests, I'm still experiencing the following
>> problem:
>>
>> calling:
>>
>> load =3fsx.cif filter "ASSEMBLY 1"
>>
>> works in the Java application *only*. That is, it
>> causes the Java Applet to 'hang' and produces the following error using
>> JSmol:
>>
>> File Error:ERROR creating model: TypeError:
>> biomolecules.get(...).get(...) is null
>> script ERROR: ERROR creating model: TypeError:
>> biomolecules.get(...).get(...) is null
>> ----
>> load "=3fsx.cif" filter >> "ASSEMBLY 1" <<
>>
>> I'm seeing this whereever I try it (various machines, various web sites,
>> and with various pdb mmcifs)
>> so I suspect it is a genuine bug?
>>
>> Cheers
>>
>> Simon
>>
>> NB. load =3fsx.cif filter "ASSEMBLY 2" works fine - its just the
>> '1_555' assembly that hangs
>>
>>
>>
>> Quoting Robert Hanson <[email protected]>:
>>
>> > Seems to me it's been over a year since we went Jmol 13, and in that time
>> > all the business of JSmol and Java issues and integration with JSpecView
>> > and JSME have come to pass. Time for a new major version number, I think.
>> >
>> > I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the end
>> > of the week. Please send all bug fix requests as soon as possible directly
>> > to this list.
>> >
>> > Very latest, with fixes for mouse wheel binding, load monitor transparency,
>> > load() function security, local JNLP applet loading, new _use _jar and _j2s
>> > URL options, but not Safari local applet loading, can be found at
>> >
>> > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.25.zip
>> >
>> > Bob
>> >
>> > --
>> > Robert M. Hanson
>> > Larson-Anderson Professor of Chemistry
>> > St. Olaf College
>> > Northfield, MN
>> > http://www.stolaf.edu/people/hansonr
>> >
>> >
>> > If nature does not answer first what we want,
>> > it is better to take what answer we get.
>> >
>> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>> >
>>
>>
>>
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>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> ------------------------------------------------------------------------------
>> Shape the Mobile Experience: Free Subscription
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>> conversations that shape the rapidly evolving mobile landscape. Sign up now.
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>
> Philip Bays
> Emeritus Professor of Chemistry
> Saint Mary's College
> Notre Dame, IN 46556
> [email protected]
>
>
>
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>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> Shape the Mobile Experience: Free Subscription
> Software experts and developers: Be at the forefront of tech innovation.
> Intel(R) Software Adrenaline delivers strategic insight and game-changing
> conversations that shape the rapidly evolving mobile landscape. Sign up now.
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Philip Bays
Emeritus Professor of Chemistry
Saint Mary's College
Notre Dame, IN 46556
[email protected]
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