Bob:
I think the trick to getting the java applet running in Safari 7.0 from the
desktop is to go to the develop menu and check the “Disable Local File
restrictions” link. That allows the applet to run in Test2. Your latest
release this evening (…25c) runs fine in Safari, with the restrictions
disabled, for both jmol and jsmol. I suspect that it is only the developer or
a presenter who will need to take that route. And one can quickly activate and
deactivate that option.
Phil
Also still runs in Firefox.
On Nov 25, 2013, at 7:29 PM, Robert Hanson <[email protected]> wrote:
> please try
>
> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.25c.zip
>
> Not only was there an issue with the applet, Jmol was not filtering the atoms
> correctly, either. These look MUCH better!
>
>
>
> On Mon, Nov 25, 2013 at 3:05 PM, <[email protected]> wrote:
> Good to see that the Java certification issue seems to be sorted.
>
> With respect to bug-fix requests, I'm still experiencing the following
> problem:
>
> calling:
>
> load =3fsx.cif filter "ASSEMBLY 1"
>
> works in the Java application *only*. That is, it
> causes the Java Applet to 'hang' and produces the following error using JSmol:
>
> File Error:ERROR creating model: TypeError:
> biomolecules.get(...).get(...) is null
> script ERROR: ERROR creating model: TypeError:
> biomolecules.get(...).get(...) is null
> ----
> load "=3fsx.cif" filter >> "ASSEMBLY 1" <<
>
> I'm seeing this whereever I try it (various machines, various web sites,
> and with various pdb mmcifs)
> so I suspect it is a genuine bug?
>
> Cheers
>
> Simon
>
> NB. load =3fsx.cif filter "ASSEMBLY 2" works fine - its just the
> '1_555' assembly that hangs
>
>
>
> Quoting Robert Hanson <[email protected]>:
>
> > Seems to me it's been over a year since we went Jmol 13, and in that time
> > all the business of JSmol and Java issues and integration with JSpecView
> > and JSME have come to pass. Time for a new major version number, I think.
> >
> > I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the end
> > of the week. Please send all bug fix requests as soon as possible directly
> > to this list.
> >
> > Very latest, with fixes for mouse wheel binding, load monitor transparency,
> > load() function security, local JNLP applet loading, new _use _jar and _j2s
> > URL options, but not Safari local applet loading, can be found at
> >
> > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.25.zip
> >
> > Bob
> >
> > --
> > Robert M. Hanson
> > Larson-Anderson Professor of Chemistry
> > St. Olaf College
> > Northfield, MN
> > http://www.stolaf.edu/people/hansonr
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
>
>
>
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>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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Philip Bays
Emeritus Professor of Chemistry
Saint Mary's College
Notre Dame, IN 46556
[email protected]
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