You’re running into another known issue: https://github.com/JuliaLang/julia/issues/12941 <https://github.com/JuliaLang/julia/issues/12941>
Try opening a normal REPL in the terminal and run “using Atom” to trigger the precompilation, then it shouldn’t need to happen when you run from Atom. -s > On Oct 27, 2015, at 9:09 PM, colintbow...@gmail.com wrote: > > Ah... understood. Many thanks. > > I'm afraid I'm still not getting the desired result however. After running > checkout on "Atom", "CodeTools" and "JuliaParser" I run Pkg.status() and can > verify I'm on the master branch for all 3. So I fire up Atom again, try to > evaluate in the editor, and get the following error: > > INFO: Recompiling stale cache file /home/colin/.julia/lib/v0.4/JuliaParser.ji > Julia has stopped: 1, null > > So I close down Atom, open it again, and try to evaluate in the editor again. > This time I get: > > INFO: Recompiling stale cache file /home/colin/.julia/lib/v0.4/CodeTools.ji > Julia has stopped: 1, null > > Close down Atom one more time, re-open it and try again. Now I get: > > INFO: Recompiling stale cache file /home/colin/.julia/lib/v0.4/Atom.ji > > but everything is now working fine. Problem solved? Unfortunately not. I > restart Atom again and I'm back to all the deprecation warnings, even though > Pkg.status() indicates I'm still on the master branch for Atom, CodeTools, > and JuliaParser. > > Apologies for the long message. Also, if this is one of those things that > will resolve itself over the next couple of weeks as changes from master are > pushed to the more stable branches, then I'm happy to ignore the warnings for > the time being and not waste anyone's time any further with what is > essentially a minor inconvenience. > > Cheers, > > Colin > > > > > On Wednesday, 28 October 2015 11:37:21 UTC+11, Spencer Russell wrote: > `Pkg.checkout(…)` operates an an already-installed package, so it must be run > after `Pkg.add(…)`. > > -s > >> On Oct 27, 2015, at 8:31 PM, colint...@gmail.com <javascript:> wrote: >> >> I suppose I could clone the master branch. Is that a bad idea? >> >> On Wednesday, 28 October 2015 11:30:43 UTC+11, colint...@gmail.com >> <http://gmail.com/> wrote: >> Thanks for responding. >> >> Pkg.checkout("Atom") gives me the error: >> >> ERROR: Atom is not a git repo >> in checkout at pkg/entry.jl:203 >> in anonymous at pkg/dir.jl:31 >> in cd at file.jl:22 >> in cd at pkg/dir.jl:31 >> in checkout at pkg.jl:37 >> >> (I originally did try using Pkg.checkout as per the instructions, but got >> this error, and so went with Pkg.add instead). >> >> Any thoughts or is this a bug? >> >> Cheers, >> >> Colin >> >> >> On Wednesday, 28 October 2015 11:23:30 UTC+11, Jonathan Malmaud wrote: >> You want to be on the master versions: >> Pkg.checkout("Atom") >> Pkg.checkout("CodeTools") >> >
