Hi Colin,

I was having the same problems while trying to get julia to work in atom 
and was hoping that this thread would provide a solution. However, I was 
alao trying to get the hydrogen to work as well but kept getting an error 
which I could not figure out the cause so posted to an issue:

https://github.com/willwhitney/hydrogen/issues/127#issuecomment-152661805

After following this great advice not only does hydrogen run without 
errors, but, the deprecation warnings that you and I were getting also 
disappeared. I am assuming that you are working on OS X.

Hope this helps.

On Wednesday, October 28, 2015 at 12:57:43 AM UTC+1, [email protected] 
wrote:
>
> Hi all,
>
> I'm using Julia v0.4 with the Atom package, on Atom 1.0 with the packages 
> ink, julia-client, and language-julia (and I'm really enjoying this as an 
> IDE solution).
>
> I can toggle the Julia console in Atom, and enter code directly into it 
> without any errors or warnings. However, as soon as I try to evaluate a 
> line of code from the Atom editor, I get a large number of deprecation 
> warnings, either of the form:
>
> WARNING: Base.Uint8 is deprecated, use UInt8 instead.
>   likely near no file:422
>
> or
>
> WARNING: Base.Uint8 is deprecated, use UInt8 instead.
>   likely near no file:422
> in skip at /home/colin/.julia/v0.4/LNR/src/LNR.jl:171
>
> Has anyone else encountered this and is there a fix? I had a look through 
> the LNR source, and there is nothing in it that should be triggering a 
> deprecation warning, nor is there even a line 171 (it only goes up to about 
> line 130).
>
> Note, I can just ignore the deprecation warnings, and continue on working 
> without a problem, so this isn't an urgent issue. Just wondering if I've 
> stuffed up the install process somehow.
>
> Cheers,
>
> Colin
>

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