You can try to integrate probekins in Machinekit.
This is a modified kinematics with geometry compensation.
It is using a matrix of points previously built by probing the surface.
Will acts as the bed compensation code we can find in Marlin firmware.

http://wiki.linuxcnc.org/cgi-bin/wiki.pl?ProbeKins

Frederic.

On 12/01/2017 16:17, 'IonicBasher' via Machinekit wrote:
So if I use the probe to obtain those points. I would then need a program to make a matrix. Then another program to compensate for all incoming gcode.

Sounds like I would be reverse engineering what is in other 3d printing firmware and porting to machinekit.

The language for machinekit is python correct?
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