for the first message about gpio forget that i have only do something for 
check if the pin input for encoder index work correctly.

from linuxcnc forum i have found this test for check index:

and seems to work fine according to the topic and your information (set 
true, trigger, check state = false) also  hpg.encoder.00.chan.00.count is 
reseted to 0


halcmd -kf
loadusr halmeter signal spindle-index-enable
sets spindle-index-enable 1

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