On 13 Feb 2007, at 11:49, Etai Jacob wrote:
> No errors.
I meant ... could you send us the contents
of this file while you are doing your query?
we need to see what comes back from the
database or webserver when you do it
cheers,
a.
>
> On 2/13/07, Arek Kasprzyk <[EMAIL PROTECTED]> wrote:
>>
>> On 13 Feb 2007, at 11:23, Etai Jacob wrote:
>>
>> > Hi,
>> >
>> > My answers below.
>>
>> Hi Etai,
>> maybe we need a little bit more debugging there.
>> Could you change the
>>
>> log4perl.threshold = FATAL
>>
>> to
>>
>> log4perl.threshold = WARN
>>
>> in biomart-perl/conf/log4perl.conf
>>
>> restart the server and see what you get
>> in the error_log?
>>
>>
>> cheers,
>> a.
>>
>>
>>
>> >
>> >> What do you mean by not seeing any results? Do you mean that you
>> get
>> >> an error message?
>> > I don't get any error messages, not on the web browser (firefox
or
>> > explorer) and not in the error log file of the httpd.
>> >
>> > Or you see the results page but the table only has
>> >> headings?
>> > No heading.
>> >
>> > What happens exactly?
>> > When pressing the "results" it waits a second and then when
"Done"
>> the
>> > page stays blank (except the default GUI of the martview on the
left
>> > side of the page).
>> >
>> >> Could you try a query with no filters at all and just one or two
>> >> attributes to see if you get results?
>> > Yes I tried with many combinations. Nothing.
>> >
>> > I tried other biomart web interface,
>> > http://www.dictybase.org/biomart/martview/, to see whether I
have a
>> > problem with the browser or JVM but it works fine.
>> >
>> > Thanks,
>> > Etai
>> >
>> >
>> >> Etai Jacob wrote:
>> >> > Hi,
>> >> >
>> >> > I am trying to execute few basic queries using the biomart web
>> >> > interface with the default configurations (as instructed in
the
>> >> > installation guide).
>> >> > I don't get to see any results on the browser even though at
the
>> >> count
>> >> > stage I see that there are relevant entries (i.e. 1/3967).
>> >> >
>> >> > What could be the problem?
>> >> > Thanks,
>> >> > Etai
>> >> >
>> >> -----BEGIN PGP SIGNATURE-----
>> >> Version: GnuPG v1.4.2.2 (GNU/Linux)
>> >> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org
>> >>
>> >> iD8DBQFF0YZf4C5LeMEKA/QRAnfjAJ4ryJaiBgNwabuiZNFijhNEvTsz8wCfa9bu
>> >> 1QBsgL/hNLndGODDdK9wmu8=
>> >> =Ro2C
>> >> -----END PGP SIGNATURE-----
>> >>
>> >>
>>
>>
>>
----------------------------------------------------------------------
>> --
>> -------
>> Arek Kasprzyk
>> EMBL-European Bioinformatics Institute.
>> Wellcome Trust Genome Campus, Hinxton,
>> Cambridge CB10 1SD, UK.
>> Tel: +44-(0)1223-494606
>> Fax: +44-(0)1223-494468
>>
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>> --
>> -------
>>
>>
>>
>>
>>
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--
-------
Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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--
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