Hi Yari, I just tried the same pipeline on some image we had here using the 2014.10 binary release and I cannot reproduce that behavior. Would it be possible for you to provide a test data set on which the error occurs so we can try and narrow it down? The details look ok to me.
Best, Caspar -----Ursprüngliche Nachricht----- Von: yari mattei [mailto:[email protected]] Gesendet: Montag, 15. Juni 2015 15:54 An: [email protected] Betreff: Re: [mitk-users] Mirror image Hi Caspar, Yes the pipeline is exactely the one you describe. Yes the surface is already mirrored in step 3 (after "create smoothed polygon model" a can see that the surface is mirrored). Because I was not sure about the data you asked me I paste the whole image details : Image (000000000A307E30) Dimension: 4 Dimensions: 256 224 208 9 Channel: Unnamed [] PixelType: BytesPerElement: 1 ComponentType: unsigned_char NumberOfComponents: 1 BitsPerComponent: 8 TimeGeometry: ProportionalTimeGeometry (000000000A7489E0) TimeSteps: 9 FirstTimePoint: 0 StepDuration: 1 ms Time Bounds: 0 - 9 GetGeometryForTimeStep(0): SlicedGeometry3D (000000000A45BB00) IndexToWorldTransform: Matrix: 0.343466 0 0 0 0.346719 0 0 0 0.198195 Offset: [0, 0, 0] Center: [0, 0, 0] Translation: [0, 0, 0] Inverse: 2.91149 0 0 0 2.88418 0 0 0 5.04553 Scale : 1 1 1 BoundingBox: ( 0,256 0,224 0,208 ) Origin: [0, 0, 0] ImageGeometry: 1 Spacing: [0.343466, 0.346719, 0.198195] EvenlySpaced: 1 DirectionVector: [0, 0, 1] Slices: 208 GetPlaneGeometry(0): PlaneGeometry (000000000A0882E0) IndexToWorldTransform: Matrix: 0.343466 0 0 0 0.346719 0 0 0 0.198195 Offset: [0, 0, 0] Center: [0, 0, 0] Translation: [0, 0, 0] Inverse: 2.91149 0 0 0 2.88418 0 0 0 5.04553 Scale : 1 1 1 BoundingBox: ( 0,256 0,224 0,1 ) Origin: [0, 0, 0] ImageGeometry: 1 Spacing: [0.343466, 0.346719, 0.198195] ScaleFactorMMPerUnitX: 0.343466 ScaleFactorMMPerUnitY: 0.346719 Normal: [0, 0, 0.198195] At the moment I am using the build-in functionality and I would like to know how to do it in the binary application. Cheers Yari Il 15.06.2015 14:45, Goch, Caspar Jonas ha scritto: > Hi Yari, > > just to be clear, your workflow is: > 1. Load a dicom file > 2. Do a segmentation > 3. create surface from segmentation > 4. Save surface as stl > 5. Load as stl > > Is the stl already mirrored in step 3 or do you need steps 4 and 5? What > coordinate system is the dicom file in? Could you give the matrix/spacing? > (right click on image -> Details) Are you using build-in MITK functionality > for step 3 or do you create the surface yourself? > > Are you looking for ways to mirror the surface in the binary application or > how to do it in code? > > Best, > Caspar > > -----Ursprüngliche Nachricht----- > Von: yari mattei [mailto:[email protected]] > Gesendet: Freitag, 12. Juni 2015 14:00 > An: [email protected] > Betreff: [mitk-users] Mirror image > > Hi everybody, > > I am using the MITK workbench to produce some stl file from a DICOM file, but > I have a problem. > > I can create the segmentation and save the stl file and it looks good besides > the fact that is mirrored (just to be clear with mirrored I mean that if the > image should be AAABBB it appears as BBBAAA). > > There is a way to mirror sagital, axial or coronal view in the workbench? Or > any other way to solve this problem? > > I hope that my explanation is clear, if not just let me know. > > Best, > > Yari > > > > ---------------------------------------------------------------------- > -------- _______________________________________________ > mitk-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users
