Hi Yari, as far as I am aware there is no button for it in the MITK binary release. However... the MITK Diffusion 2014.10.02 binary release contains the "basic image processing" view, which is able to flip images (no surface though) so you could flip the image to match the surface. This might not be what you want, depending on your use case.
Does this help? Best, Caspar -----Ursprüngliche Nachricht----- Von: yari mattei [mailto:yari.mat...@student.supsi.ch] Gesendet: Dienstag, 16. Juni 2015 13:32 An: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] Mirror image Hi Caspar, thanks for the answer, at the moment I have only real image that I cannot share but I asked for a sherable sample. So there is no way to mirror the coordinate - of one of the three views - directly in the binary release? Do you know perhaps another way to do that? Cheers, Yari Il 15.06.2015 17:15, Goch, Caspar Jonas ha scritto: > Hi Yari, > > I just tried the same pipeline on some image we had here using the 2014.10 > binary release and I cannot reproduce that behavior. Would it be possible for > you to provide a test data set on which the error occurs so we can try and > narrow it down? The details look ok to me. > > Best, > Caspar > > -----Ursprüngliche Nachricht----- > Von: yari mattei [mailto:yari.mat...@student.supsi.ch] > Gesendet: Montag, 15. Juni 2015 15:54 > An: mitk-users@lists.sourceforge.net > Betreff: Re: [mitk-users] Mirror image > > Hi Caspar, > > Yes the pipeline is exactely the one you describe. Yes the surface is already > mirrored in step 3 (after "create smoothed polygon model" a can see that the > surface is mirrored). > > Because I was not sure about the data you asked me I paste the whole image > details : > > Image (000000000A307E30) > Dimension: 4 > Dimensions: 256 224 208 9 > Channel: Unnamed [] > PixelType: > BytesPerElement: 1 > ComponentType: unsigned_char > NumberOfComponents: 1 > BitsPerComponent: 8 > > TimeGeometry: ProportionalTimeGeometry (000000000A7489E0) > TimeSteps: 9 > FirstTimePoint: 0 > StepDuration: 1 ms > Time Bounds: 0 - 9 > > GetGeometryForTimeStep(0): SlicedGeometry3D (000000000A45BB00) > IndexToWorldTransform: > Matrix: > 0.343466 0 0 > 0 0.346719 0 > 0 0 0.198195 > Offset: [0, 0, 0] > Center: [0, 0, 0] > Translation: [0, 0, 0] > Inverse: > 2.91149 0 0 > 0 2.88418 0 > 0 0 5.04553 > Scale : 1 1 1 > BoundingBox: ( 0,256 0,224 0,208 ) > Origin: [0, 0, 0] > ImageGeometry: 1 > Spacing: [0.343466, 0.346719, 0.198195] > EvenlySpaced: 1 > DirectionVector: [0, 0, 1] > Slices: 208 > > GetPlaneGeometry(0): PlaneGeometry (000000000A0882E0) > IndexToWorldTransform: > Matrix: > 0.343466 0 0 > 0 0.346719 0 > 0 0 0.198195 > Offset: [0, 0, 0] > Center: [0, 0, 0] > Translation: [0, 0, 0] > Inverse: > 2.91149 0 0 > 0 2.88418 0 > 0 0 5.04553 > Scale : 1 1 1 > BoundingBox: ( 0,256 0,224 0,1 ) > Origin: [0, 0, 0] > ImageGeometry: 1 > Spacing: [0.343466, 0.346719, 0.198195] > ScaleFactorMMPerUnitX: 0.343466 > ScaleFactorMMPerUnitY: 0.346719 > Normal: [0, 0, 0.198195] > > At the moment I am using the build-in functionality and I would like to know > how to do it in the binary application. > > Cheers > > Yari > > Il 15.06.2015 14:45, Goch, Caspar Jonas ha scritto: >> Hi Yari, >> >> just to be clear, your workflow is: >> 1. Load a dicom file >> 2. Do a segmentation >> 3. create surface from segmentation >> 4. Save surface as stl >> 5. Load as stl >> >> Is the stl already mirrored in step 3 or do you need steps 4 and 5? What >> coordinate system is the dicom file in? Could you give the matrix/spacing? >> (right click on image -> Details) Are you using build-in MITK functionality >> for step 3 or do you create the surface yourself? >> >> Are you looking for ways to mirror the surface in the binary application or >> how to do it in code? >> >> Best, >> Caspar >> >> -----Ursprüngliche Nachricht----- >> Von: yari mattei [mailto:yari.mat...@student.supsi.ch] >> Gesendet: Freitag, 12. Juni 2015 14:00 >> An: mitk-users@lists.sourceforge.net >> Betreff: [mitk-users] Mirror image >> >> Hi everybody, >> >> I am using the MITK workbench to produce some stl file from a DICOM file, >> but I have a problem. >> >> I can create the segmentation and save the stl file and it looks good >> besides the fact that is mirrored (just to be clear with mirrored I mean >> that if the image should be AAABBB it appears as BBBAAA). >> >> There is a way to mirror sagital, axial or coronal view in the workbench? Or >> any other way to solve this problem? >> >> I hope that my explanation is clear, if not just let me know. >> >> Best, >> >> Yari >> >> >> >> --------------------------------------------------------------------- >> - >> -------- _______________________________________________ >> mitk-users mailing list >> mitk-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/mitk-users > > ---------------------------------------------------------------------- > -------- _______________________________________________ > mitk-users mailing list > mitk-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
