Hi Caspar, thanks for the answer, at the moment I have only real image that I cannot share but I asked for a sherable sample. So there is no way to mirror the coordinate - of one of the three views - directly in the binary release?
Do you know perhaps another way to do that? Cheers, Yari Il 15.06.2015 17:15, Goch, Caspar Jonas ha scritto: > Hi Yari, > > I just tried the same pipeline on some image we had here using the 2014.10 > binary release and I cannot reproduce that behavior. Would it be possible for > you to provide a test data set on which the error occurs so we can try and > narrow it down? The details look ok to me. > > Best, > Caspar > > -----Ursprüngliche Nachricht----- > Von: yari mattei [mailto:[email protected]] > Gesendet: Montag, 15. Juni 2015 15:54 > An: [email protected] > Betreff: Re: [mitk-users] Mirror image > > Hi Caspar, > > Yes the pipeline is exactely the one you describe. Yes the surface is already > mirrored in step 3 (after "create smoothed polygon model" a can see that the > surface is mirrored). > > Because I was not sure about the data you asked me I paste the whole image > details : > > Image (000000000A307E30) > Dimension: 4 > Dimensions: 256 224 208 9 > Channel: Unnamed [] > PixelType: > BytesPerElement: 1 > ComponentType: unsigned_char > NumberOfComponents: 1 > BitsPerComponent: 8 > > TimeGeometry: ProportionalTimeGeometry (000000000A7489E0) > TimeSteps: 9 > FirstTimePoint: 0 > StepDuration: 1 ms > Time Bounds: 0 - 9 > > GetGeometryForTimeStep(0): SlicedGeometry3D (000000000A45BB00) > IndexToWorldTransform: > Matrix: > 0.343466 0 0 > 0 0.346719 0 > 0 0 0.198195 > Offset: [0, 0, 0] > Center: [0, 0, 0] > Translation: [0, 0, 0] > Inverse: > 2.91149 0 0 > 0 2.88418 0 > 0 0 5.04553 > Scale : 1 1 1 > BoundingBox: ( 0,256 0,224 0,208 ) > Origin: [0, 0, 0] > ImageGeometry: 1 > Spacing: [0.343466, 0.346719, 0.198195] > EvenlySpaced: 1 > DirectionVector: [0, 0, 1] > Slices: 208 > > GetPlaneGeometry(0): PlaneGeometry (000000000A0882E0) > IndexToWorldTransform: > Matrix: > 0.343466 0 0 > 0 0.346719 0 > 0 0 0.198195 > Offset: [0, 0, 0] > Center: [0, 0, 0] > Translation: [0, 0, 0] > Inverse: > 2.91149 0 0 > 0 2.88418 0 > 0 0 5.04553 > Scale : 1 1 1 > BoundingBox: ( 0,256 0,224 0,1 ) > Origin: [0, 0, 0] > ImageGeometry: 1 > Spacing: [0.343466, 0.346719, 0.198195] > ScaleFactorMMPerUnitX: 0.343466 > ScaleFactorMMPerUnitY: 0.346719 > Normal: [0, 0, 0.198195] > > At the moment I am using the build-in functionality and I would like to know > how to do it in the binary application. > > Cheers > > Yari > > Il 15.06.2015 14:45, Goch, Caspar Jonas ha scritto: >> Hi Yari, >> >> just to be clear, your workflow is: >> 1. Load a dicom file >> 2. Do a segmentation >> 3. create surface from segmentation >> 4. Save surface as stl >> 5. Load as stl >> >> Is the stl already mirrored in step 3 or do you need steps 4 and 5? What >> coordinate system is the dicom file in? Could you give the matrix/spacing? >> (right click on image -> Details) Are you using build-in MITK functionality >> for step 3 or do you create the surface yourself? >> >> Are you looking for ways to mirror the surface in the binary application or >> how to do it in code? >> >> Best, >> Caspar >> >> -----Ursprüngliche Nachricht----- >> Von: yari mattei [mailto:[email protected]] >> Gesendet: Freitag, 12. Juni 2015 14:00 >> An: [email protected] >> Betreff: [mitk-users] Mirror image >> >> Hi everybody, >> >> I am using the MITK workbench to produce some stl file from a DICOM file, >> but I have a problem. >> >> I can create the segmentation and save the stl file and it looks good >> besides the fact that is mirrored (just to be clear with mirrored I mean >> that if the image should be AAABBB it appears as BBBAAA). >> >> There is a way to mirror sagital, axial or coronal view in the workbench? Or >> any other way to solve this problem? >> >> I hope that my explanation is clear, if not just let me know. >> >> Best, >> >> Yari >> >> >> >> ---------------------------------------------------------------------- >> -------- _______________________________________________ >> mitk-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/mitk-users > > ------------------------------------------------------------------------------ > _______________________________________________ > mitk-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users
