Hi Yari, if you select an image and open the "choose an operation" dropdown box there should be a scrollbar on the right. At the very bottom should be a section "Misc" which, among others, contains a "Flipping" Filter
Best, Caspar -----Ursprüngliche Nachricht----- Von: yari mattei [mailto:yari.mat...@student.supsi.ch] Gesendet: Dienstag, 16. Juni 2015 14:42 An: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] Mirror image Hi Caspar, I am trying to do what you suggest but on the "basic image processing" I cannot find anything to flip image (just denoising and morphological filters and arithmetic to do on 2 images) I also tried to look around in the other view but I didn't find anything. Am I making some mistake? Thanks Yari Il 16.06.2015 14:00, Goch, Caspar Jonas ha scritto: > Hi Yari, > > as far as I am aware there is no button for it in the MITK binary release. > However... the MITK Diffusion 2014.10.02 binary release contains the "basic > image processing" view, which is able to flip images (no surface though) so > you could flip the image to match the surface. This might not be what you > want, depending on your use case. > > Does this help? > > Best, > Caspar > > -----Ursprüngliche Nachricht----- > Von: yari mattei [mailto:yari.mat...@student.supsi.ch] > Gesendet: Dienstag, 16. Juni 2015 13:32 > An: mitk-users@lists.sourceforge.net > Betreff: Re: [mitk-users] Mirror image > > Hi Caspar, > > thanks for the answer, at the moment I have only real image that I cannot > share but I asked for a sherable sample. > So there is no way to mirror the coordinate - of one of the three > views > - directly in the binary release? > > Do you know perhaps another way to do that? > > Cheers, > Yari > > Il 15.06.2015 17:15, Goch, Caspar Jonas ha scritto: >> Hi Yari, >> >> I just tried the same pipeline on some image we had here using the 2014.10 >> binary release and I cannot reproduce that behavior. Would it be possible >> for you to provide a test data set on which the error occurs so we can try >> and narrow it down? The details look ok to me. >> >> Best, >> Caspar >> >> -----Ursprüngliche Nachricht----- >> Von: yari mattei [mailto:yari.mat...@student.supsi.ch] >> Gesendet: Montag, 15. Juni 2015 15:54 >> An: mitk-users@lists.sourceforge.net >> Betreff: Re: [mitk-users] Mirror image >> >> Hi Caspar, >> >> Yes the pipeline is exactely the one you describe. Yes the surface is >> already mirrored in step 3 (after "create smoothed polygon model" a can see >> that the surface is mirrored). >> >> Because I was not sure about the data you asked me I paste the whole image >> details : >> >> Image (000000000A307E30) >> Dimension: 4 >> Dimensions: 256 224 208 9 >> Channel: Unnamed [] >> PixelType: >> BytesPerElement: 1 >> ComponentType: unsigned_char >> NumberOfComponents: 1 >> BitsPerComponent: 8 >> >> TimeGeometry: ProportionalTimeGeometry (000000000A7489E0) >> TimeSteps: 9 >> FirstTimePoint: 0 >> StepDuration: 1 ms >> Time Bounds: 0 - 9 >> >> GetGeometryForTimeStep(0): SlicedGeometry3D (000000000A45BB00) >> IndexToWorldTransform: >> Matrix: >> 0.343466 0 0 >> 0 0.346719 0 >> 0 0 0.198195 >> Offset: [0, 0, 0] >> Center: [0, 0, 0] >> Translation: [0, 0, 0] >> Inverse: >> 2.91149 0 0 >> 0 2.88418 0 >> 0 0 5.04553 >> Scale : 1 1 1 >> BoundingBox: ( 0,256 0,224 0,208 ) >> Origin: [0, 0, 0] >> ImageGeometry: 1 >> Spacing: [0.343466, 0.346719, 0.198195] >> EvenlySpaced: 1 >> DirectionVector: [0, 0, 1] >> Slices: 208 >> >> GetPlaneGeometry(0): PlaneGeometry (000000000A0882E0) >> IndexToWorldTransform: >> Matrix: >> 0.343466 0 0 >> 0 0.346719 0 >> 0 0 0.198195 >> Offset: [0, 0, 0] >> Center: [0, 0, 0] >> Translation: [0, 0, 0] >> Inverse: >> 2.91149 0 0 >> 0 2.88418 0 >> 0 0 5.04553 >> Scale : 1 1 1 >> BoundingBox: ( 0,256 0,224 0,1 ) >> Origin: [0, 0, 0] >> ImageGeometry: 1 >> Spacing: [0.343466, 0.346719, 0.198195] >> ScaleFactorMMPerUnitX: 0.343466 >> ScaleFactorMMPerUnitY: 0.346719 >> Normal: [0, 0, 0.198195] >> >> At the moment I am using the build-in functionality and I would like to know >> how to do it in the binary application. >> >> Cheers >> >> Yari >> >> Il 15.06.2015 14:45, Goch, Caspar Jonas ha scritto: >>> Hi Yari, >>> >>> just to be clear, your workflow is: >>> 1. Load a dicom file >>> 2. Do a segmentation >>> 3. create surface from segmentation >>> 4. Save surface as stl >>> 5. Load as stl >>> >>> Is the stl already mirrored in step 3 or do you need steps 4 and 5? What >>> coordinate system is the dicom file in? Could you give the matrix/spacing? >>> (right click on image -> Details) Are you using build-in MITK functionality >>> for step 3 or do you create the surface yourself? >>> >>> Are you looking for ways to mirror the surface in the binary application or >>> how to do it in code? >>> >>> Best, >>> Caspar >>> >>> -----Ursprüngliche Nachricht----- >>> Von: yari mattei [mailto:yari.mat...@student.supsi.ch] >>> Gesendet: Freitag, 12. Juni 2015 14:00 >>> An: mitk-users@lists.sourceforge.net >>> Betreff: [mitk-users] Mirror image >>> >>> Hi everybody, >>> >>> I am using the MITK workbench to produce some stl file from a DICOM file, >>> but I have a problem. >>> >>> I can create the segmentation and save the stl file and it looks good >>> besides the fact that is mirrored (just to be clear with mirrored I mean >>> that if the image should be AAABBB it appears as BBBAAA). >>> >>> There is a way to mirror sagital, axial or coronal view in the workbench? >>> Or any other way to solve this problem? >>> >>> I hope that my explanation is clear, if not just let me know. >>> >>> Best, >>> >>> Yari >>> >>> >>> >>> -------------------------------------------------------------------- >>> - >>> - >>> -------- _______________________________________________ >>> mitk-users mailing list >>> mitk-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/mitk-users >> --------------------------------------------------------------------- >> - >> -------- _______________________________________________ >> mitk-users mailing list >> mitk-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/mitk-users > > ---------------------------------------------------------------------- > -------- _______________________________________________ > mitk-users mailing list > mitk-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
