Hi Tomas, Thank you for your quick reply! I searched my whole peaklist using PubChem database. The parameters are: Ionization method -H, Number of results 10, Mass tolerance 0.004, Use Isotope pattern filter, threshold 65%.
Thanks, Grace On Mon, Jun 20, 2011 at 6:28 PM, Tomas Pluskal <[email protected]> wrote: > Hi Grace, > There is a problem with METLIN, because the structure of their website has > changed recently. They are now developing a SOAP API > (http://metlin.scripps.edu/soap/), which should make it easier for MZmine to > connect to their database. I hope their SOAP gateway will be ready soon and > we can have proper connection to METLIN in MZmine 2.3. > I am not aware of the PubChem problem. Can you provide the exact parameters > that you used for search (mass, tolerance etc.). > Cheers, > Tomas > On Jun 21, 2011, at 6:14 AM, Grace Xiaolu Yang wrote: > > Hi MZmine developers, > > Thank you so much for developing this wonderful tool! I am new to > MZmine and I am having some troubles using online database search. > When I search METLIN Database, I always get the following error > message: > Could not connect to METLIN Database: java.io.IOException: could not > parse compound name for compound 357 (MetLinGateway.java:111) > > When I use PubChem Compound Database, the searching process is often > interrupted by this folllowing error message: > Could not connect to PubChem Compound Database: java.io.IOException: > could not parse compound name (PubChemGateway.java:115) > > Could you tell me how to solve this problem? > > Thanks a lot! > Grace > > ------------------------------------------------------------------------------ > EditLive Enterprise is the world's most technically advanced content > authoring tool. Experience the power of Track Changes, Inline Image > Editing and ensure content is compliant with Accessibility Checking. > http://p.sf.net/sfu/ephox-dev2dev > _______________________________________________ > Mzmine-devel mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mzmine-devel > > > =============================================== > Tomas Pluskal > G0 Cell Unit, Okinawa Institute of Science and Technology > 1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan > TEL: +81-98-966-8684 > > > > > ------------------------------------------------------------------------------ EditLive Enterprise is the world's most technically advanced content authoring tool. Experience the power of Track Changes, Inline Image Editing and ensure content is compliant with Accessibility Checking. http://p.sf.net/sfu/ephox-dev2dev _______________________________________________ Mzmine-devel mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mzmine-devel
