Can you find which peak caused the problem? I need to know the mass range to reproduce the problem.
Tomas On Jun 21, 2011, at 1:50 PM, Grace Xiaolu Yang wrote: > Hi Tomas, > > Thank you for your quick reply! I searched my whole peaklist using > PubChem database. The parameters are: Ionization method -H, Number of > results 10, Mass tolerance 0.004, Use Isotope pattern filter, > threshold 65%. > > Thanks, > Grace > > On Mon, Jun 20, 2011 at 6:28 PM, Tomas Pluskal <plus...@oist.jp> wrote: >> Hi Grace, >> There is a problem with METLIN, because the structure of their website has >> changed recently. They are now developing a SOAP API >> (http://metlin.scripps.edu/soap/), which should make it easier for MZmine to >> connect to their database. I hope their SOAP gateway will be ready soon and >> we can have proper connection to METLIN in MZmine 2.3. >> I am not aware of the PubChem problem. Can you provide the exact parameters >> that you used for search (mass, tolerance etc.). >> Cheers, >> Tomas >> On Jun 21, 2011, at 6:14 AM, Grace Xiaolu Yang wrote: >> >> Hi MZmine developers, >> >> Thank you so much for developing this wonderful tool! I am new to >> MZmine and I am having some troubles using online database search. >> When I search METLIN Database, I always get the following error >> message: >> Could not connect to METLIN Database: java.io.IOException: could not >> parse compound name for compound 357 (MetLinGateway.java:111) >> >> When I use PubChem Compound Database, the searching process is often >> interrupted by this folllowing error message: >> Could not connect to PubChem Compound Database: java.io.IOException: >> could not parse compound name (PubChemGateway.java:115) >> >> Could you tell me how to solve this problem? >> >> Thanks a lot! >> Grace >> >> ------------------------------------------------------------------------------ >> EditLive Enterprise is the world's most technically advanced content >> authoring tool. Experience the power of Track Changes, Inline Image >> Editing and ensure content is compliant with Accessibility Checking. >> http://p.sf.net/sfu/ephox-dev2dev >> _______________________________________________ >> Mzmine-devel mailing list >> Mzmine-devel@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/mzmine-devel >> >> >> =============================================== >> Tomas Pluskal >> G0 Cell Unit, Okinawa Institute of Science and Technology >> 1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan >> TEL: +81-98-966-8684 >> >> >> >> >> > > ------------------------------------------------------------------------------ > EditLive Enterprise is the world's most technically advanced content > authoring tool. Experience the power of Track Changes, Inline Image > Editing and ensure content is compliant with Accessibility Checking. > http://p.sf.net/sfu/ephox-dev2dev > _______________________________________________ > Mzmine-devel mailing list > Mzmine-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mzmine-devel > =============================================== Tomas Pluskal G0 Cell Unit, Okinawa Institute of Science and Technology 1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan TEL: +81-98-966-8684 ------------------------------------------------------------------------------ EditLive Enterprise is the world's most technically advanced content authoring tool. Experience the power of Track Changes, Inline Image Editing and ensure content is compliant with Accessibility Checking. http://p.sf.net/sfu/ephox-dev2dev _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
