Hi Thomas,
Since i'm a new user of MZmine. I can't really catch what do you mean by
peak detection algorithms that MZmine are not going to work? Is there any
reason for that? Is it related with the data format error or the peak
separation problem?
Thanks
Tomas Pluskal <plus...@oist.jp> 於 2012年3月7日下午2:17 寫道：
> Hi Yee-Soon,
>
> OK I added support for this kind of file to MZmine. It will simply treat
> the 'pr' scans as regular MS level 1 scans. This will be included in MZmine
> 2.7.
>
> However, I am not sure what kind of processing you are planning with
> this data - I think the peak detection algorithms that we use are not going
> to work..
>
> Best regards,
>
> Tomas
>
>
> On Mar 7, 2012, at 10:13 AM, YS LING wrote:
>
> Thomas,
> I had sent to the https://www.yousendit.com/download/
> M3BsTXRVdVUwVW1LRmNUQw<https://www.yousendit.com/download/M3BsTXRVdVUwVW1LRmNUQw>.
> please do check it up.
> Regarding that RAW data, I scan the biological lipids, phosphatidyl
> choline (PC) under Parent ion scan mode m/z 184 (its common fragment). As
> you can see, One single peak contains multiple PCs. besides, some std had
> been spiked within the this scan.
>
> Tomas Pluskal <plus...@oist.jp> 於 2012年3月7日上午8:47 寫道：
>
>> Please use DropBox / RapidShare / Skydrive etc.
>> http://www.google.com/?q=send+large+file
>>
>> Tomas
>>
>> On Mar 6, 2012, at 11:47 PM, YS LING wrote:
>>
>> Hi Thomas,
>> The TIC file is quite huge, about 22MB (13mb when zipped). Is there any
>> other way i can send it to you as gmail reported that your e-mail had
>> rejected my attached file.
>> Thanks a lot.
>>
>> Tomas Pluskal <plus...@oist.jp> 於 2012年3月6日下午12:26 寫道：
>>
>>> Hi Ys,
>>>
>>> So far I have never encountered "Parent ion Scan" file. If you can
>>> provide some files to test and write some description of this data, I can
>>> add the support to MZmine.
>>>
>>> Best regards,
>>>
>>> Tomas
>>>
>>>
>>> On Mar 4, 2012, at 4:58 PM, YS LING wrote:
>>>
>>> Hi MZmine Development Team,
>>>
>>> I just download the MZmine software to analyze some of my RAW data
>>> collected from the Thermo TSQ. I did install the Thermo specialized
>>> software named 'MSFileReader'. I tried to run the raw data import, and it
>>> kept showing the following error.
>>>
>>> Task error: java.io.IOexpection: Unexpected format: SCAN FILTER: +c
>>> ESI Full pr 184.000 [300-1000] (XcalibourRawFileReadTask.java:218)
>>>
>>> <image.png>
>>>
>>>
>>> Is this a bug or MZmine simply can't open the RAW data which obtained
>>> via Parent ion Scan? Please do assist me with this problem. Thanks a lot.
>>> --
>>> YS LING
>>>
>>> ------------------------------------------------------------------------------
>>> Virtualization & Cloud Management Using Capacity Planning
>>> Cloud computing makes use of virtualization - but cloud computing
>>> also focuses on allowing computing to be delivered as a service.
>>>
>>> http://www.accelacomm.com/jaw/sfnl/114/51521223/_______________________________________________
>>> Mzmine-devel mailing list
>>> Mzmine-devel@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
>>>
>>>
>>> ===============================================
>>> Tomas Pluskal
>>> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
>>> University
>>> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
>>> TEL: +81-98-966-8684
>>>
>>>
>>
>>
>> --
>> Yee-Soon LING
>>
>> ------------------------------------------------------------------------------
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>>
>>
>> ===============================================
>> Tomas Pluskal
>> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
>> University
>> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
>> TEL: +81-98-966-8684
>>
>>
>
>
> --
> Yee-Soon LING
>
> ------------------------------------------------------------------------------
> Virtualization & Cloud Management Using Capacity Planning
> Cloud computing makes use of virtualization - but cloud computing
> also focuses on allowing computing to be delivered as a service.
>
> http://www.accelacomm.com/jaw/sfnl/114/51521223/_______________________________________________
> Mzmine-devel mailing list
> Mzmine-devel@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
>
>
> ===============================================
> Tomas Pluskal
> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
> University
> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
> TEL: +81-98-966-8684
>
>
--
Yee-Soon LING
------------------------------------------------------------------------------
Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
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